View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0487_low_3 (Length: 295)
Name: NF0487_low_3
Description: NF0487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0487_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 29 - 275
Target Start/End: Original strand, 38453024 - 38453285
Alignment:
| Q |
29 |
aacttctattatggattatttctgatactaatctgatttgggaatcaagcagcaagtgcgcattttatcaaaccgcccgcggacattttttaacacttga |
128 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
38453024 |
aacttctattatgaattatttctgatactaatctgatttgagaatcaagcagcaagtgcgcattttatcaaaccgtccgcggacattttttaacacttga |
38453123 |
T |
|
| Q |
129 |
agccatctactctattagagtcaaatgattttctacataaggtcatgactataa---------------aacaattgaaaaaaggtgataatagtggtaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
38453124 |
agccatctactctattagagtcaaatgattttctacataaggtcatgattataaaataattaagtatataacaattgaaaaaaggtgataatagtggtaa |
38453223 |
T |
|
| Q |
214 |
ccatgaatactctatcaaattttccatattagttttttgttcaaaaaatcaaataatttacc |
275 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38453224 |
ccatgaatactatatcaaattttccataatagttttttgttcaaaaaatcaaataatttacc |
38453285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 43 - 175
Target Start/End: Complemental strand, 39849533 - 39849400
Alignment:
| Q |
43 |
attatttctgatactaatctgatttgggaatcaagcagcaagtgcgcattttat--caaaccgcccgcggacattttttaaca---cttgaagccatcta |
137 |
Q |
| |
|
||||||||| |||||||||||||||||||||| || |||||||| ||||||| | ||||||| || |||||||||||| | |||||||||||||| |
|
|
| T |
39849533 |
attatttcttatactaatctgatttgggaatcgagaagcaagtgtgcattttttttcaaaccgtcca--gacattttttaaaaacccttgaagccatcta |
39849436 |
T |
|
| Q |
138 |
ctctattagagtcaaatgattttctacataaggtcatg |
175 |
Q |
| |
|
| |||| || |||||||||||||||||||||| |||| |
|
|
| T |
39849435 |
ccctataag--tcaaatgattttctacataaggccatg |
39849400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 178 - 275
Target Start/End: Complemental strand, 39849378 - 39849279
Alignment:
| Q |
178 |
tataaaacaattgaaa-aaaggtgataatagtggtaaccatgaatactctatcaaattttccatattagttt-tttgttcaaaaaatcaaataatttacc |
275 |
Q |
| |
|
|||| |||| |||||| ||||||||||||||||||||||| ||||||| |||||||||||||||| || ||| || || |||| ||||||||||||||| |
|
|
| T |
39849378 |
tatagaacagttgaaagaaaggtgataatagtggtaaccacgaatactatatcaaattttccataatactttaattttttaaaagatcaaataatttacc |
39849279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University