View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0487_low_5 (Length: 256)
Name: NF0487_low_5
Description: NF0487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0487_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 35 - 241
Target Start/End: Original strand, 4873973 - 4874178
Alignment:
| Q |
35 |
ggtatatggtttaccaatgctatgctttattgataattgaaaagaaggcatagttgtacgctatataggtccttcatcatcgagtgtaggtgtgacctta |
134 |
Q |
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| T |
4873973 |
ggtatatggtttatcaaagctatgctttattgataattgaaaagaaggcatagttgtacgctatataggtccttcatcatcgactgtaggtgtgacctta |
4874072 |
T |
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| Q |
135 |
tactaaaaaagtcctaatagagataactgaaaccgagatgaggtagaccggatttaaattcttcattgattgattgattttttatttataagccatgttg |
234 |
Q |
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| T |
4874073 |
tactaaaaaagtcctaatagagataattgaaaccgagatgaggtagatcggatttaaattcttcattgattgatt-tttttttatttataagccatgttg |
4874171 |
T |
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| Q |
235 |
tcctatg |
241 |
Q |
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| T |
4874172 |
ttctatg |
4874178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 39 - 144
Target Start/End: Original strand, 4874823 - 4874928
Alignment:
| Q |
39 |
tatggtttaccaatgctatgctttattgataattgaaaagaaggcatagttgtacgctatataggtccttcatcatcgagtgtaggtgtgaccttatact |
138 |
Q |
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| T |
4874823 |
tatggtttatcaaagctatgctttattgataattgaaaagaaagcatagttgtacgctatacaggtccttcatcatcgagtgtgggtgtgaccttatact |
4874922 |
T |
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| Q |
139 |
aaaaaa |
144 |
Q |
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||||| |
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| T |
4874923 |
caaaaa |
4874928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 146 - 235
Target Start/End: Original strand, 4874975 - 4875063
Alignment:
| Q |
146 |
tcctaatagagataactgaaaccgagatgaggtagaccggatttaaattcttcattgattgattgattttttatttataagccatgttgt |
235 |
Q |
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| T |
4874975 |
tcctaatagagctaattgaaaccgagaggaggtagatcggatttaaattcttcattgattgattg-ttttttattcatgagccatgttgt |
4875063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 4893629 - 4893689
Alignment:
| Q |
41 |
tggtttaccaatgctatgctttattgataattgaaaagaaggcatagttgtacgctatata |
101 |
Q |
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| T |
4893629 |
tggtttatcaatgctatgctttattgataattgaaaagaaagcatagttgtacgccatata |
4893689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 146 - 234
Target Start/End: Original strand, 4883944 - 4884030
Alignment:
| Q |
146 |
tcctaatagagataactgaaaccgagatgaggtagaccggatttaaattcttcattgattgattgattttttatttataagccatgttg |
234 |
Q |
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| T |
4883944 |
tcctaatagggctaattgaaaccgagatgaggtaga--ggattcaaattcttcattgattgattgcttttttatttttgacccatgttg |
4884030 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 174 - 224
Target Start/End: Original strand, 4893809 - 4893858
Alignment:
| Q |
174 |
gaggtagaccggatttaaattcttcattgattgattgattttttatttata |
224 |
Q |
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| T |
4893809 |
gaggtagatcggatttaaattcttcattgattgattg-ttttttatttata |
4893858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 99 - 147
Target Start/End: Complemental strand, 4646459 - 4646411
Alignment:
| Q |
99 |
ataggtccttcatcatcgagtgtaggtgtgaccttatactaaaaaagtc |
147 |
Q |
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| T |
4646459 |
ataggtccttcatcatcgagtgtgggtgtgaccttatattgaaaaagtc |
4646411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 92
Target Start/End: Complemental strand, 13096712 - 13096675
Alignment:
| Q |
55 |
tatgctttattgataattgaaaagaaggcatagttgta |
92 |
Q |
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| T |
13096712 |
tatgctttattgaagattgaaaagaaggcatagttgta |
13096675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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