View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0488_high_7 (Length: 276)
Name: NF0488_high_7
Description: NF0488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0488_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 3e-97; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 13 - 248
Target Start/End: Complemental strand, 2343540 - 2343316
Alignment:
| Q |
13 |
aaaattgaaattttatttttctttattatttaccttctagaatggatgaatataggaggtgtaaatagaaaatgtagaaaagttagaaataaaatacctc |
112 |
Q |
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| T |
2343540 |
aaaattgaaattttatttttctttattatttaccttctagaatggatgaatataggaggtgtaaatagaaaatgtagaaaagttagaaataaaatacctc |
2343441 |
T |
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| Q |
113 |
tttagtgtaaaccatgaagttgtgggaatcatggtgggaatcatggtgatggtggaagacattatggatggttccatgaacaagactttggatgttactt |
212 |
Q |
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| T |
2343440 |
tttggtgtaaaccatgaagttgtgggaatcat------------ggtgatggtggaagacattatggatggttccatgaacaagactttggatgttactt |
2343353 |
T |
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| Q |
213 |
gtagttgtaa-ttatcatgttagtgtaatatctaact |
248 |
Q |
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| T |
2343352 |
gtagttgtaactcatcatgttagtgtaatatctaact |
2343316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 54 - 248
Target Start/End: Complemental strand, 2336086 - 2335909
Alignment:
| Q |
54 |
atggatgaatataggaggtgtaaatagaaaatgtagaaaagttagaaataaaatacctctttagtgtaaaccatgaagttgtgggaatcatggtgggaat |
153 |
Q |
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||||||| ||||||||||||||||||||||||| | ||| ||||| ||| ||||||| ||| ||||||||||||||||||||||||| ||||||| |
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| T |
2336086 |
atggatggatataggaggtgtaaatagaaaatggacaaatgttagttatacaatacctttttggtgtaaaccatgaagttgtgggaataatggtgg---- |
2335991 |
T |
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| Q |
154 |
catggtgatggtggaagacattatggatggttccatgaacaagactttggatgttacttgtagttgtaa-ttatcatgttagtgtaatatctaact |
248 |
Q |
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| T |
2335990 |
--------------aaggcattatggatggctccatgaacaagactttggatgttacttgcagttgtaactcatcatgtcagcgtaatatctaact |
2335909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 221
Target Start/End: Complemental strand, 2312805 - 2312764
Alignment:
| Q |
180 |
atggttccatgaacaagactttggatgttacttgtagttgta |
221 |
Q |
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| T |
2312805 |
atggttccatggacaagactttggatgttacttgcagttgta |
2312764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 146
Target Start/End: Complemental strand, 2312866 - 2312825
Alignment:
| Q |
105 |
aatacctctttagtgtaaaccatgaagttgtgggaatcatgg |
146 |
Q |
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| T |
2312866 |
aatacatctttggtgtaaaccatgaagttgtgggaatcatgg |
2312825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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