View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0488_low_1 (Length: 521)

Name: NF0488_low_1
Description: NF0488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0488_low_1
NF0488_low_1
[»] chr7 (2 HSPs)
chr7 (94-506)||(4589189-4589601)
chr7 (124-456)||(26140127-26140468)
[»] chr3 (10 HSPs)
chr3 (127-456)||(12074980-12075318)
chr3 (124-456)||(22023021-22023362)
chr3 (418-514)||(5891438-5891535)
chr3 (418-514)||(16319036-16319133)
chr3 (418-514)||(18500030-18500127)
chr3 (418-479)||(18508944-18509005)
chr3 (418-479)||(18511112-18511173)
chr3 (205-320)||(36537092-36537207)
chr3 (376-443)||(6769723-6769790)
chr3 (383-456)||(36537279-36537352)
[»] scaffold0126 (1 HSPs)
scaffold0126 (124-456)||(8428-8769)
[»] chr5 (2 HSPs)
chr5 (124-456)||(34137344-34137687)
chr5 (373-511)||(15536996-15537135)
[»] chr4 (3 HSPs)
chr4 (110-320)||(16380047-16380257)
chr4 (418-511)||(14709568-14709662)
chr4 (395-479)||(23118288-23118372)
[»] chr6 (4 HSPs)
chr6 (231-456)||(24405834-24406068)
chr6 (418-479)||(22945222-22945283)
chr6 (418-479)||(23867666-23867727)
chr6 (397-514)||(22234432-22234550)
[»] chr1 (2 HSPs)
chr1 (418-514)||(16843298-16843395)
chr1 (418-511)||(20974761-20974855)
[»] chr2 (1 HSPs)
chr2 (376-479)||(29443136-29443239)
[»] chr8 (2 HSPs)
chr8 (418-514)||(24440613-24440710)
chr8 (373-443)||(25313145-25313215)
[»] scaffold0001 (1 HSPs)
scaffold0001 (205-320)||(158506-158621)
[»] scaffold0084 (1 HSPs)
scaffold0084 (124-456)||(24731-25072)
[»] scaffold0035 (1 HSPs)
scaffold0035 (110-247)||(58359-58494)


Alignment Details
Target: chr7 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 94 - 506
Target Start/End: Original strand, 4589189 - 4589601
Alignment:
Q  94 ttgacaacgaaagactcttagaggttcgtaagaacaagtcctaccctttcatttggtagttctccgcccaagtatggcttgattctctgtccattcacct 193  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  4589189 ttgacagcgaaagactcttagaggtccgtaagaacaagtcctaccctttcatttggtagttctccacccaagtatggcttgattctctgtccattcacct 4589288  T
Q  194 tgaaaatcctatcaccttccggagtcatcaactccatagctccatgaggtgacaaaattttaatcacgaatggccctgaccacttggacttcagctttcc 293  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  4589289 tgaaaatcctatcaccttccgaagtcatcaactccatagctccatgaggtgacaaaattttgatcacgaatggccctgaccacttggacttcagctttcc 4589388  T
Q  294 agaaaataaattcaacctggaattatatagttgcctagcgttaaactccctagacactaagtgtttttcatggtatcgctttgttctttctttataaatg 393  Q
    |||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4589389 agaaaataaattaaacctggaattatatagttgcccagcattaaactccctagacactaagtgtttttcatggtatcgctttgttctttctttataaatg 4589488  T
Q  394 agcgcattttcataagctctcaacctcatttcctctaactcatttagtttcaaaagtcttttcatactagctagagtttgatcaaatttagggccttgat 493  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  4589489 agcgcattttcataagctctcaacctcatttcctctaactcatttagtttcaaaagtcttttcttaccagctagagtttgatcaaatttagggccttgat 4589588  T
Q  494 aacccaataagct 506  Q
    ||||| |||||||    
T  4589589 aacccgataagct 4589601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 124 - 456
Target Start/End: Original strand, 26140127 - 26140468
Alignment:
Q  124 agaacaagtcctaccctttcatttggtagttctccgcccaagtatggcttgattctctgtccattcaccttgaaaatcctatcaccttccggagtcatca 223  Q
    ||||| ||||||||||| || || ||||| || || ||||  |||||||| | |||||| ||||| || |||||| | |  |||||||| || |||||||    
T  26140127 agaacgagtcctaccctctccttgggtaggtcgccacccagatatggcttaactctctgcccattaactttgaaacttcggtcaccttcaggtgtcatca 26140226  T
Q  224 actccatagctccatgaggtgacaaaattttaatcacgaatggccctgaccacttggacttcagctttccagaaaataaattcaacctggaattata--- 320  Q
    |||| | |||||| |||||| ||| | |||| | || ||| || || |||||||| ||||| |||||||||| ||| |  |||||||||||||||||       
T  26140227 actcaacagctccgtgaggtaacacactttttaccaggaaaggtccagaccactttgacttgagctttccaggaaacagcttcaacctggaattatacaa 26140326  T
Q  321 ------tagttgcctagcgttaaactccctagacactaagtgtttttcatggtatcgctttgttctttctttataaatgagcgcattttcataagctctc 414  Q
          ||||||||  | |||||  |||||||| ||||||| ||| ||||| || |  |||||||   ||||||| ||||||||||||||||| |||||     
T  26140327 caaaactagttgcccggagttaatatccctagaaactaagtttttgtcatgatacctttttgttcgggctttatagatgagcgcattttcatacgctcta 26140426  T
Q  415 aacctcatttcctctaactcatttagtttcaaaagtcttttc 456  Q
    | |||||| ||||| |  ||||| |||||||| |||||||||    
T  26140427 agcctcatctcctcaagttcattaagtttcaagagtcttttc 26140468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 1e-36; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 127 - 456
Target Start/End: Complemental strand, 12075318 - 12074980
Alignment:
Q  127 acaagtcctaccctttcatttggtagttctccgcccaagtatggcttgattctctgtccattcaccttgaaaatcctatcaccttccggagtcatcaact 226  Q
    ||||||||| || |||| ||||||||||| || ||||| |||| ||| | |||||| ||||| || |||||||     || || ||||  |||||||| |    
T  12075318 acaagtcctgccttttcttttggtagttcgccacccaaatatgacttaactctctgaccattgactttgaaaaaaaattcgccctccgacgtcatcaatt 12075219  T
Q  227 ccatagctccatgaggtgacaaaattttaatcacgaatggccctgaccacttggacttcagctttccagaaaataaattcaacctggaattatata---- 322  Q
    | |   ||||||||||||||| | |||  || | ||| || || ||||| || |||||||||||||||| ||| |   ||||||||||||||||||        
T  12075218 caactactccatgaggtgacacactttcgattatgaacggtccagaccattttgacttcagctttccaggaaacagcatcaacctggaattatataacaa 12075119  T
Q  323 -----gttgcctagcgttaaactccctagacactaagtgtttttcatggtatcgctttgttctttctttataaatgagcgcattttcataagctctcaac 417  Q
         ||||||||| |||||||||||||||||||||||  || |||||||| | |||||||||||| ||||||||||||||||||||||| |||||||||    
T  12075118 gactggttgcctagagttaaactccctagacactaagttcttgtcatggtacctctttgttctttccttataaatgagcgcattttcatacgctctcaac 12075019  T
Q  418 ctcatttcctctaactcatttagtttcaaaagtcttttc 456  Q
    || |||||||| | |||||| | |||||| |||| ||||    
T  12075018 cttatttcctcaagctcattcaatttcaagagtcatttc 12074980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 124 - 456
Target Start/End: Complemental strand, 22023362 - 22023021
Alignment:
Q  124 agaacaagtcctaccctttcatttggtagttctccgcccaagtatggcttgattctctgtccattcaccttgaaaatcctatcaccttccggagtcatca 223  Q
    ||||| ||||||||||| || |||||||| || || || |  |||||||| | |||||| ||||| || |||||| | |  |||||||| || |||||||    
T  22023362 agaacgagtcctaccctctcctttggtaggtcgccaccaagatatggcttaactctctgcccattgactttgaaacttcggtcaccttcaggtgtcatca 22023263  T
Q  224 actccatagctccatgaggtgacaaaattttaatcacgaatggccctgaccacttggacttcagctttccagaaaataaattcaacctggaattata--- 320  Q
    |||| | ||||||||||||||||| | |||| | || ||| || || |||||||| ||||| |||||||||| ||| |  |||||||||||||||||       
T  22023262 actcaacagctccatgaggtgacacactttttaccaggaaaggtccagaccactttgacttgagctttccaggaaacagcttcaacctggaattatacaa 22023163  T
Q  321 ------tagttgcctagcgttaaactccctagacactaagtgtttttcatggtatcgctttgttctttctttataaatgagcgcattttcataagctctc 414  Q
          |||||||| || |||||  |||||||| ||||||| ||| ||||| || |  |||||||   ||||||| ||||||||||||||||| |||||     
T  22023162 caaaactagttgcccagagttaatatccctagaaactaagtttttgtcatgatacctttttgttcgggctttatagatgagcgcattttcatacgctcta 22023063  T
Q  415 aacctcatttcctctaactcatttagtttcaaaagtcttttc 456  Q
    | |||||| ||||| |  ||||| |||||||| |||||||||    
T  22023062 agcctcatctcctcaagttcattaagtttcaagagtcttttc 22023021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 418 - 514
Target Start/End: Original strand, 5891438 - 5891535
Alignment:
Q  418 ctcatttcctctaactcatttagtttcaaaagtcttttcatactagctagagtttgatc-aaatttagggccttgataacccaataagctctgtgctc 514  Q
    |||||||| ||||||||||| |||||||| ||||||||| ||| ||||||||||||||| ||||| ||||| |||||  ||||||||||| |||||||    
T  5891438 ctcatttcttctaactcattgagtttcaagagtcttttcttaccagctagagtttgatcgaaattaagggctttgatggcccaataagctttgtgctc 5891535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 418 - 514
Target Start/End: Original strand, 16319036 - 16319133
Alignment:
Q  418 ctcatttcctctaactcatttagtttcaaaagtcttttcatactagctagagtttgatc-aaatttagggccttgataacccaataagctctgtgctc 514  Q
    |||||||| ||||||||||| |||||||| ||||||||| ||| ||||||||||||||| ||||| || || |||||  ||||||||||| |||||||    
T  16319036 ctcatttcttctaactcattgagtttcaagagtcttttcttaccagctagagtttgatcaaaattaagagctttgatggcccaataagctttgtgctc 16319133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 418 - 514
Target Start/End: Original strand, 18500030 - 18500127
Alignment:
Q  418 ctcatttcctctaactcatttagtttcaaaagtcttttcatactagctagagtttgatc-aaatttagggccttgataacccaataagctctgtgctc 514  Q
    |||||||| ||||||||||| |||||||| ||||||||| ||| ||||||||||||||| ||||| || || |||||  ||||||||||| |||||||    
T  18500030 ctcatttcttctaactcattgagtttcaagagtcttttcttaccagctagagtttgatcaaaattaagagctttgatggcccaataagctttgtgctc 18500127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 418 - 479
Target Start/End: Original strand, 18508944 - 18509005
Alignment:
Q  418 ctcatttcctctaactcatttagtttcaaaagtcttttcatactagctagagtttgatcaaa 479  Q
    |||||||| ||||||||||| || ||||| ||||||||| ||| ||||||||||||||||||    
T  18508944 ctcatttcttctaactcattgagattcaagagtcttttcttaccagctagagtttgatcaaa 18509005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 418 - 479
Target Start/End: Original strand, 18511112 - 18511173
Alignment:
Q  418 ctcatttcctctaactcatttagtttcaaaagtcttttcatactagctagagtttgatcaaa 479  Q
    |||||||| ||||||||||| || ||||| ||||||||| ||| ||||||||||||||||||    
T  18511112 ctcatttcttctaactcattgagattcaagagtcttttcttaccagctagagtttgatcaaa 18511173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 205 - 320
Target Start/End: Original strand, 36537092 - 36537207
Alignment:
Q  205 tcaccttccggagtcatcaactccatagctccatgaggtgacaaaattttaatcacgaatggccctgaccacttggacttcagctttccagaaaataaat 304  Q
    |||||||| || ||| ||||||| | ||||| ||||||||||| | |||| | || |||||| ||  ||||||| ||||| || ||||||| ||| || |    
T  36537092 tcaccttcaggtgtcgtcaactcaacagctctatgaggtgacacacttttgaccaagaatggtccataccactttgacttgagttttccaggaaacaact 36537191  T
Q  305 tcaacctggaattata 320  Q
    ||||||||||||||||    
T  36537192 tcaacctggaattata 36537207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 443
Target Start/End: Original strand, 6769723 - 6769790
Alignment:
Q  376 gttctttctttataaatgagcgcattttcataagctctcaacctcatttcctctaactcatttagttt 443  Q
    ||||||||||| ||||| |||||||||||||| ||   |||||||||||| || || |||||||||||    
T  6769723 gttctttctttgtaaattagcgcattttcatacgcctgcaacctcatttcttccaattcatttagttt 6769790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 456
Target Start/End: Original strand, 36537279 - 36537352
Alignment:
Q  383 ctttataaatgagcgcattttcataagctctcaacctcatttcctctaactcatttagtttcaaaagtcttttc 456  Q
    ||||||| ||||||||||||||||| ||||| | |||| | || || |  ||||| ||||||||||||||||||    
T  36537279 ctttatagatgagcgcattttcatatgctctaagcctcgtctcttcaagttcattaagtttcaaaagtcttttc 36537352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 124 - 456
Target Start/End: Original strand, 8428 - 8769
Alignment:
Q  124 agaacaagtcctaccctttcatttggtagttctccgcccaagtatggcttgattctctgtccattcaccttgaaaatcctatcaccttccggagtcatca 223  Q
    ||||||| | |||||||||| ||||||||||| || ||||  |||| ||| | |||||| || |||||||||||| | ||||||||||| || |||||||    
T  8428 agaacaatttctaccctttcttttggtagttcaccacccagatatgacttaactctctgccctttcaccttgaaacttctatcaccttcaggtgtcatca 8527  T
Q  224 actccatagctccatgaggtgacaaaattttaatcacgaatggccctgaccacttggacttcagctttccagaaaataaattcaacctggaattata--- 320  Q
    |||| | ||||||||||| ||||| | |||| | || ||| || || ||||| || ||||| ||||||| |||||| |  |||||||||||||||||       
T  8528 actcaacagctccatgagttgacacatttttgaccaagaacggtccagaccattttgacttgagctttctagaaaacagcttcaacctggaattatataa 8627  T
Q  321 ------tagttgcctagcgttaaactccctagacactaagtgtttttcatggtatcgctttgttctttctttataaatgagcgcattttcataagctctc 414  Q
          |||||||| |  |||||  |||||||| ||||||| ||| ||||| || |  || ||  |  ||||||||||||||||||||||||| || ||     
T  8628 caaaactagttgcccaaagttaatttccctagatactaagtttttgtcatgataccttttagtcttggctttataaatgagcgcattttcatacgcccta 8727  T
Q  415 aacctcatttcctctaactcatttagtttcaaaagtcttttc 456  Q
    | |||||| ||||| |  |||||||||||||| |||||||||    
T  8728 agcctcatctcctcaagttcatttagtttcaagagtcttttc 8769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 124 - 456
Target Start/End: Original strand, 34137344 - 34137687
Alignment:
Q  124 agaacaagtcctaccctttcatttggtagttctccgcccaagtatggcttgattctctgtccattcaccttgaaaatcctatcaccttccggagtcatca 223  Q
    ||||| ||||||||||| || |||||||| || || || |  |||||||| | |||||| ||||| || |||||| | |  |||||||| || |||||||    
T  34137344 agaacgagtcctaccctctcctttggtaggtcgccaccaagatatggcttaactctctgcccattgactttgaaacttcggtcaccttcaggtgtcatca 34137443  T
Q  224 actccatagctccatgaggtgacaaaattttaatcacgaatggccctgaccacttggacttcagctttccagaaaataaattcaacctggaattata--- 320  Q
    |||| | ||||||||||||||||| | |||| | || ||| || || |||||||| ||||| |||||||||| ||| |  |||||||||||||||||       
T  34137444 actcaacagctccatgaggtgacacactttttaccaggaaaggtccagaccactttgacttgagctttccaggaaacagcttcaacctggaattatacaa 34137543  T
Q  321 ------tagttgcctagcgttaaactccctagacactaagtgtttt--tcatggtatcgctttgttctttctttataaatgagcgcattttcataagctc 412  Q
          |||||||| || |||||  |||||||| ||||||| ||||  |||||||| |  |||||||   ||||||| ||||||||||||||||| ||||    
T  34137544 caaaactagttgcccagagttaatatccctagaaactaagtttttttgtcatggtacctttttgttcgggctttatagatgagcgcattttcatacgctc 34137643  T
Q  413 tcaacctcatttcctctaactcatttagtttcaaaagtcttttc 456  Q
    | | |||||| ||||| |  ||||| |||||||| |||||||||    
T  34137644 taagcctcatctcctcaagttcattaagtttcaagagtcttttc 34137687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 373 - 511
Target Start/End: Original strand, 15536996 - 15537135
Alignment:
Q  373 tttgttctttctttataaatgagcg-cattttcataagctctcaacctcatttcctctaactcatttagtttcaaaagtcttttcatactagctagagtt 471  Q
    |||||||  ||||||||||| |||| ||||||||||||| ||||||||||||||||| | |||||| || ||||| || || ||| ||| ||||| |||     
T  15536996 tttgttcgctctttataaat-agcggcattttcataagcactcaacctcatttcctcaagctcattgagcttcaatagcctcttcctaccagctaaagtc 15537094  T
Q  472 tgatcaaa-tttagggccttgataacccaataagctctgtg 511  Q
    |||||||| || |||||||| ||| |||| |||||| ||||    
T  15537095 tgatcaaagttaagggccttaatagcccagtaagctttgtg 15537135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 4e-27; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 110 - 320
Target Start/End: Original strand, 16380047 - 16380257
Alignment:
Q  110 cttagaggttcgtaagaacaagtcctaccctttcatttggtagttctccgcccaagtatggcttgattctctgtccattcaccttgaaaatcctatcacc 209  Q
    ||||||||| ||| |||| ||||||||||||| |||||||||| || || ||||  |||||||| | |||||||||||| ||||||||| | |  |||||    
T  16380047 cttagaggtccgtcagaataagtcctacccttgcatttggtaggtcgccacccagatatggcttaactctctgtccatttaccttgaaacttcggtcacc 16380146  T
Q  210 ttccggagtcatcaactccatagctccatgaggtgacaaaattttaatcacgaatggccctgaccacttggacttcagctttccagaaaataaattcaac 309  Q
     || || ||||||||||| | | ||||||||||||||| | |||| |||| ||| || |   ||||||| ||||| |||||||||| ||| || ||||||    
T  16380147 gtcaggtgtcatcaactcaacaactccatgaggtgacacacttttgatcaagaacggtctaaaccactttgacttgagctttccaggaaacaacttcaac 16380246  T
Q  310 ctggaattata 320  Q
     ||||||||||    
T  16380247 ttggaattata 16380257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 418 - 511
Target Start/End: Complemental strand, 14709662 - 14709568
Alignment:
Q  418 ctcatttcctctaactcatttagtttcaaaagtcttttcatactagctagagtttga-tcaaatttagggccttgataacccaataagctctgtg 511  Q
    |||||||| ||||||||||| |||||||| ||||||||| ||| ||||||||||||| | ||||| ||||  |||||  ||||||||||| ||||    
T  14709662 ctcatttcttctaactcattgagtttcaagagtcttttcttaccagctagagtttgattaaaattaagggttttgatggcccaataagctttgtg 14709568  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 395 - 479
Target Start/End: Complemental strand, 23118372 - 23118288
Alignment:
Q  395 gcgcattttcataagctctcaacctcatttcctctaactcatttagtttcaaaagtcttttcatactagctagagtttgatcaaa 479  Q
    ||||||||||| | |||  ||||||||||||||| |||||||||||||| |  || |||||| ||| | ||||||| ||||||||    
T  23118372 gcgcattttcaaacgcttgcaacctcatttcctccaactcatttagtttaaggagccttttcctaccaactagagtctgatcaaa 23118288  T

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Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 231 - 456
Target Start/End: Complemental strand, 24406068 - 24405834
Alignment:
Q  231 agctccatgaggtgacaaaattttaatcacgaatggccctgaccacttggacttcagctttccagaaaataaattcaacctggaattata---------t 321  Q
    ||||||||||||||||| | |||| | || ||||||||| |||||||| ||||| |||||||||| ||| |  |||||||||||||||||         |    
T  24406068 agctccatgaggtgacacacttttgaccaggaatggcccagaccactttgacttgagctttccaggaaacagcttcaacctggaattatacaacaaaact 24405969  T
Q  322 agttgcctagcgttaaactccctagacactaagtgtttttcatggtatcgctttgttctttctttataaatgagcgcattttcataagctctcaacctca 421  Q
    | ||||| || |||||  |||||||| ||||||| ||| ||||| || |  || |||||  |||| || ||||||||||||||||| ||||| | |||||    
T  24405968 aattgcccagagttaatatccctagaaactaagtttttgtcatgataccttttcgttctggctttgtagatgagcgcattttcatacgctctaagcctca 24405869  T
Q  422 tttcctctaactcatttagtttcaaaagtcttttc 456  Q
    | ||||| |  ||||| |||||||| |||||||||    
T  24405868 tctcctcaagttcattaagtttcaagagtcttttc 24405834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 418 - 479
Target Start/End: Complemental strand, 22945283 - 22945222
Alignment:
Q  418 ctcatttcctctaactcatttagtttcaaaagtcttttcatactagctagagtttgatcaaa 479  Q
    |||||||| ||||||||||| |||||||| ||||||||| ||| ||||||||||||||||||    
T  22945283 ctcatttcttctaactcattgagtttcaagagtcttttcttaccagctagagtttgatcaaa 22945222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 418 - 479
Target Start/End: Complemental strand, 23867727 - 23867666
Alignment:
Q  418 ctcatttcctctaactcatttagtttcaaaagtcttttcatactagctagagtttgatcaaa 479  Q
    |||||||| ||||||||||| |||||||| ||||||||| ||| ||||||||||||||||||    
T  23867727 ctcatttcttctaactcattgagtttcaagagtcttttcttaccagctagagtttgatcaaa 23867666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 397 - 514
Target Start/End: Complemental strand, 22234550 - 22234432
Alignment:
Q  397 gcattttcataagctctcaacctcatttcctctaactcatttagtttcaaaagtcttttcatactagctagagtttgatcaaa-tttagggccttgataa 495  Q
    |||||||||||||| |||||||| |||||||| | ||||||||| ||||| || || ||| ||| |||||  || |||||||| || |||||||| |||     
T  22234550 gcattttcataagcactcaaccttatttcctcaagctcatttagcttcaatagcctcttcctaccagctaaggtctgatcaaagttaagggccttaatag 22234451  T
Q  496 cccaataagctctgtgctc 514  Q
    |||| || ||| |||||||    
T  22234450 cccagtatgctttgtgctc 22234432  T

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Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 418 - 514
Target Start/End: Original strand, 16843298 - 16843395
Alignment:
Q  418 ctcatttcctctaactcatttagtttcaaaagtcttttcatactagctagagtttgatc-aaatttagggccttgataacccaataagctctgtgctc 514  Q
    |||||||| ||||||||||| |||||||| ||||||||| ||| ||||||||||||||| ||||| ||||| |||||  ||||||||||| |||||||    
T  16843298 ctcatttcttctaactcattgagtttcaagagtcttttcttaccagctagagtttgatcgaaattaagggctttgatggcccaataagctttgtgctc 16843395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 418 - 511
Target Start/End: Complemental strand, 20974855 - 20974761
Alignment:
Q  418 ctcatttcctctaactcatttagtttcaaaagtcttttcatactagctagagtttgatc-aaatttagggccttgataacccaataagctctgtg 511  Q
    |||||||| |||| |||||| || ||||| ||||||||| ||| | ||||||||||||| ||||| ||||| |||||  ||||||| ||| ||||    
T  20974855 ctcatttcttctagctcattgagcttcaagagtcttttcttaccaactagagtttgatcaaaattaagggctttgatggcccaatatgctttgtg 20974761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 376 - 479
Target Start/End: Original strand, 29443136 - 29443239
Alignment:
Q  376 gttctttctttataaatgagcgcattttcataagctctcaacctcatttcctctaactcatttagtttcaaaagtcttttcatactagctagagtttgat 475  Q
    |||||||| || ||||| |||||||||||||| |||  |||| |||||||||| || ||||||||||||| |||||||| | ||| ||||||| | ||||    
T  29443136 gttctttccttgtaaattagcgcattttcatatgcttgcaacttcatttcctccaattcatttagtttcagaagtctttccttaccagctagaatgtgat 29443235  T
Q  476 caaa 479  Q
    ||||    
T  29443236 caaa 29443239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 418 - 514
Target Start/End: Complemental strand, 24440710 - 24440613
Alignment:
Q  418 ctcatttcctctaactcatttagtttcaaaagtcttttcatactagctagagtttgatc-aaatttagggccttgataacccaataagctctgtgctc 514  Q
    |||||||| ||||||||||| || ||||| ||||||||| ||| ||||||||||||||| ||||| || || |||||  ||||||||||| |||||||    
T  24440710 ctcatttcttctaactcattgagcttcaagagtcttttcttaccagctagagtttgatcaaaattaagagctttgatggcccaataagctttgtgctc 24440613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 443
Target Start/End: Complemental strand, 25313215 - 25313145
Alignment:
Q  373 tttgttctttctttataaatgagcgcattttcataagctctcaacctcatttcctctaactcatttagttt 443  Q
    |||||||||||||||||||| |||||||| ||||| ||   |||||||||||| || || |||||||||||    
T  25313215 tttgttctttctttataaattagcgcattatcatacgcctgcaacctcatttcttccaattcatttagttt 25313145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 205 - 320
Target Start/End: Original strand, 158506 - 158621
Alignment:
Q  205 tcaccttccggagtcatcaactccatagctccatgaggtgacaaaattttaatcacgaatggccctgaccacttggacttcagctttccagaaaataaat 304  Q
    |||||||| || ||||||||||| | ||||||||||||||||| | |||| |||| |||| | |   ||||||| ||||| |||||||||  ||| || |    
T  158506 tcaccttcaggtgtcatcaactcaacagctccatgaggtgacacacttttgatcaagaatagtctataccactttgacttgagctttccaagaaacaact 158605  T
Q  305 tcaacctggaattata 320  Q
    ||||||||||||||||    
T  158606 tcaacctggaattata 158621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 124 - 456
Target Start/End: Complemental strand, 25072 - 24731
Alignment:
Q  124 agaacaagtcctaccctttcatttggtagttctccgcccaagtatggcttgattctctgtccattcaccttgaaaatcctatcaccttccggagtcatca 223  Q
    |||| |||| ||||||| || |||||||| || || ||||  |||||||| | |||||| ||||| || |||||| | |  |||||||| || |||| ||    
T  25072 agaataagttctaccctctcctttggtaggtcgccacccagatatggcttaactctctgcccattaactttgaaacttcggtcaccttcaggtgtcaaca 24973  T
Q  224 actccatagctccatgaggtgacaaaattttaatcacgaatggccctgaccacttggacttcagctttccagaaaataaattcaacctggaattata--- 320  Q
    | || | | |||||| |||||||| | |||| | || ||||||  | |||||||| ||||| |||||| ||| ||| || |||||||||||||||||       
T  24972 attcaacaactccattaggtgacacacttttgaccaggaatggttcagaccactttgacttgagcttttcaggaaacaacttcaacctggaattataaaa 24873  T
Q  321 ------tagttgcctagcgttaaactccctagacactaagtgtttttcatggtatcgctttgttctttctttataaatgagcgcattttcataagctctc 414  Q
          || ||||| || |||||  |||||||| ||||||| |||  |||| || |  ||||||||  |||| || ||||||||||||||||| |||||     
T  24872 caaaactaattgcccagagttaatatccctagaaactaagtttttgacatgatacctttttgttctggctttgtagatgagcgcattttcatacgctcta 24773  T
Q  415 aacctcatttcctctaactcatttagtttcaaaagtcttttc 456  Q
    | |||||| ||||  |  ||||| |||||||| ||| |||||    
T  24772 agcctcatctccttaagttcattaagtttcaagagtattttc 24731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 110 - 247
Target Start/End: Complemental strand, 58494 - 58359
Alignment:
Q  110 cttagaggttcgtaagaacaagtcctaccctttcatttggtagttctccgcccaagtatggcttgattctctgtccattcaccttgaaaatcctatcacc 209  Q
    ||||||||| ||| | || ||||| ||||||| |||||||||| || || ||||  |||||||| | |||  ||  ||||||||||||| | || |||||    
T  58494 cttagaggtccgtcacaataagtcttacccttgcatttggtaggtcgccacccagatatggcttaactctgcgt--attcaccttgaaacttctgtcacc 58397  T
Q  210 ttccggagtcatcaactccatagctccatgaggtgaca 247  Q
    ||| || |||||||| || |  ||||||||||||||||    
T  58396 ttcaggtgtcatcaattcaacggctccatgaggtgaca 58359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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