View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0488_low_2 (Length: 435)
Name: NF0488_low_2
Description: NF0488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0488_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 66 - 426
Target Start/End: Original strand, 10856727 - 10857087
Alignment:
| Q |
66 |
agatagtgttctatatcggttccttggcatgttacccattataagaaagttggaattcagacatggtttacttgaagagttgttctctgctgaaagacct |
165 |
Q |
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| T |
10856727 |
agatagtgttctatatcggttccttggcatgttacccattataagaaagttggaattcagatatggtttacttgaagagttgttctctgctgaaagacct |
10856826 |
T |
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| Q |
166 |
aatgctgattacacaagattcctcttgcacctcaaagaaatagagttaaataagatttttaatctcaactccattggtttagagcactcttggctacacc |
265 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10856827 |
aatgctgattacacaagattcctcttgcacctcaaagaaatagagttaaataagatttttaatctcaactccattggtttagagcactcttggctacacc |
10856926 |
T |
|
| Q |
266 |
ccattcttgaaaatctccaaacattacaagtaagacgctgctatcgtttaataaacttggtaccagacatggtatctttctccagcctcacatatttgga |
365 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10856927 |
ccattcttgaaaatctccaaacattagaagtaagacgctgctatcgtttaataaacttggtaccagacatggtatctttctccagcctcacatatttgga |
10857026 |
T |
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| Q |
366 |
tgtaagtatatgtagtggaatgctatatctgtttacatcgtcaacagccaaaagtctgtgc |
426 |
Q |
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| T |
10857027 |
tgtaagtatatgtagtggaatgctatatctgtttacatcgtcaacagccaaaagtctgtgc |
10857087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 137 - 426
Target Start/End: Original strand, 10888301 - 10888590
Alignment:
| Q |
137 |
ttgaagagttgttctctgctgaaagacctaatgctgattacacaagattcctcttgcacctcaaagaaatagagttaaataagatttttaatctcaactc |
236 |
Q |
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|||||||| | |||||| |||||||||||||||||||||||| ||| ||||||||||||| | |||||||||||||||||| || |||||||||||||| |
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| T |
10888301 |
ttgaagagatattctctcctgaaagacctaatgctgattacaaaagtgtcctcttgcacctaacagaaatagagttaaataatatgtttaatctcaactc |
10888400 |
T |
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| Q |
237 |
cattggtttagagcactcttggctacaccccattcttgaaaatctccaaacattacaagtaagacgctgctatcgtttaataaacttggtaccagacatg |
336 |
Q |
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|||||||||||||||||||||||||||| |||||| |||||||||| ||| |||| ||||| | ||| |||||||||||||||||||||||||||| |
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| T |
10888401 |
cattggtttagagcactcttggctacactccattcctgaaaatctcaaaaaattagtagtaacaaactgtggtcgtttaataaacttggtaccagacatg |
10888500 |
T |
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| Q |
337 |
gtatctttctccagcctcacatatttggatgtaagtatatgtagtggaatgctatatctgtttacatcgtcaacagccaaaagtctgtgc |
426 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10888501 |
gtatctttctccagcctcaaatatttggatgtaagtatatgtagtggaatgctatatctgtttacatcgtcaacagccaaaagtctgtgc |
10888590 |
T |
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