View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0488_low_3 (Length: 429)
Name: NF0488_low_3
Description: NF0488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0488_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 30 - 417
Target Start/End: Original strand, 45906467 - 45906854
Alignment:
| Q |
30 |
tgagttatgagtaggtcatgttactgatcatgtaggatggtcaagtatgtcactcaaatgacgtttaacttagcagagaaatgaacaaaaacaaaactgc |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45906467 |
tgagttatgagtaggtcatgttactgatcatgtaggatgatcaagtatgtcactcaaatgacgtttaacttagcagagaaatgaacaaaaacaaaactgc |
45906566 |
T |
|
| Q |
130 |
atattaagcaagaatgtaagtggcgtagttctaactcaaaatagtagttcttcacccaatattctagaatttcgtgggaaaaaagaagaggattgcacgt |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45906567 |
atattaagcaagaatgtaagtggcgtagttctaactcaaaatagtagttcttcacccaatattctagaatttcgtgggaaaaaagaagaggattgcacgt |
45906666 |
T |
|
| Q |
230 |
ggataatctcatccctgatttcattcaactgtatatatggaccacagcaatcagcatcatgagttgtctttgcatccatccatacctacgtcacgtgcta |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45906667 |
ggataatctcatccctgatttcattcaactgtatatatggaccacagcaatcagcatcatgagttgtctttgcatccatccatacctacgtcacgtgcta |
45906766 |
T |
|
| Q |
330 |
gcacaattctgataactctactaccctgatgaaagtatcctggccattcttcctcaccatgattaccattaatgacggtgattagtat |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
45906767 |
gcacaattctgataactctactaccctgatgaaagtatcctggccattcttcctcaccatgattaccattaatgacagtgattagtat |
45906854 |
T |
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