View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0488_low_4 (Length: 400)
Name: NF0488_low_4
Description: NF0488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0488_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 9 - 372
Target Start/End: Complemental strand, 3282140 - 3281777
Alignment:
| Q |
9 |
gagatgaacttacatgatacatgaaatggaattccaacttttcttgaattgaattgttgatgagaaaatcttttggagtaaggtagagatccacctctga |
108 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3282140 |
gagaagaacttacatgatacatgaaatggaattccaacttttcttgaattgaattgttgatgagaaaatcttttggagtaaggtagagatccacctctga |
3282041 |
T |
|
| Q |
109 |
tcttggtgaaagaactgtgagagagaaaacaagcatccatattatttgagtaactttgttttaagatgagagtgagagatcaagtttggtggaatatgta |
208 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3282040 |
tcttggtgaaagaactgtgggagagaaaacaagcatccatattatttgagtaactttgtttttagatgagagtgagagatcaagtttggtggaatatgta |
3281941 |
T |
|
| Q |
209 |
tatggtataaattgaaaatgtgatttaataagcaccacatagaagtattttgtactatatcttcatctcatccaaagtttggtgtgtattaaaatgtatg |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3281940 |
tatggtataaattgaaaatgtgatttaataagcaccacatagaagtattttgtactatatcttcatctcatccaaagtttggtgtgtattaaaatgtatg |
3281841 |
T |
|
| Q |
309 |
ggctaatggatatgctttgacaaatggcaaataggacaatcaacacatagttttacacggaact |
372 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
3281840 |
ggctaatggatatgctttgacaaatggcaaataggacaatcaacacatagtgctacacggaact |
3281777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 369 times since January 2019
Visitors: 3472