View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0488_low_6 (Length: 357)
Name: NF0488_low_6
Description: NF0488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0488_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 28 - 279
Target Start/End: Complemental strand, 53042362 - 53042109
Alignment:
| Q |
28 |
actcagaaaaattataaattactggattaacaacattatccacaaaaaccaaagaacaacaaatagtgtgaatctagcctaaataagtgatagaggcttg |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
53042362 |
actcagaaaaattataaattactggattaacaacattatccacaaaaaccaaagaacaacaaatagtgtgaatctagcctaaataagtgatagaggtttg |
53042263 |
T |
|
| Q |
128 |
agatttgaaccaaagatttgataaattatattcctcaacaagagaaaaataaaacttgtcaaaagaagccatcaatgtcttcatg--tatgtatatttaa |
225 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||| |
|
|
| T |
53042262 |
agatttgaaccaaagatttaataaattatattcctcaacaagagaaaaataaaacttgtcaaaagaagccatcaatgtcttcatgtatatttaaatttaa |
53042163 |
T |
|
| Q |
226 |
gacaaaatgttatatgttgtaaatgaagaaaatcattgttgcaaccatcatttt |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53042162 |
gacaaaatgttatatgttgtaaatgaagaaaatcattgttgcaaccatcatttt |
53042109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 640 times since January 2019
Visitors: 3486