View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0489_high_3 (Length: 274)
Name: NF0489_high_3
Description: NF0489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0489_high_3 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 46146379 - 46146652
Alignment:
| Q |
1 |
caacaagatatgttacaacatctagcaggcaagcatcaaagagaaagaggaactattgtagtatagattgtaaaagtagagaagtgaaatgaaggtatac |
100 |
Q |
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| T |
46146379 |
caacaagatatgttacaacatctagcaggcaagcatcaaagagaaagaggaactattgtagtatagattgtaaaagtagagaagtgaaatgaaggtatac |
46146478 |
T |
|
| Q |
101 |
tcacgctaaaccttcagctgcaccaactgttatgctcattcttctaggccaatctagtaaacaatctgaagcaagttgaccatgtaaatgagtgagcaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46146479 |
tcacgctaaaccttcagctgcaccaactgttatgctcattcttctaggccaatcaagtaaacaatctgaagcaagttgaccatgtaaatgagtgagcaag |
46146578 |
T |
|
| Q |
201 |
ctatgattaggcatgtaatcatacacaattaacctttcatctcctcctgcatagaaccccctcaatcctaacaa |
274 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46146579 |
ctatgattagacatgtaatcatacacaattaacctttcatctcctcctgcatagaaccccctcaatcctaacaa |
46146652 |
T |
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