View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0489_low_1 (Length: 2103)
Name: NF0489_low_1
Description: NF0489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0489_low_1 |
 | |
|
| [»] scaffold0479 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 1090; Significance: 0; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 1090; E-Value: 0
Query Start/End: Original strand, 818 - 1978
Target Start/End: Complemental strand, 12934689 - 12933528
Alignment:
| Q |
818 |
atttttgcaatttagattgccaagatacagctccccctgcaaaagtaaacacaattcttgaagtagactttctaccatccaggtcacctgccatatccgc |
917 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12934689 |
atttttgcaatttagattgccaagatacagctccccctgcaaaagtaaacacaattcctgaagtagactttctaccatccaggtcacctgccatatccgc |
12934590 |
T |
|
| Q |
918 |
ctctgtgtagcctttcaaaatcgaatctgatcctccaaagcataagcacttattagagcttcctttcagatacctcaagatccacttcacagcttcccaa |
1017 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12934589 |
atctgtgtagcctttcaaaagcgaatctgatcctccaaagcataagcacttattagagcttcctttcagatacctcaagatccacttcacagcttcccaa |
12934490 |
T |
|
| Q |
1018 |
tgttcttttcccggattg-aaagaaacctgctaacaactccaactgcacgagcaatatctggcctggtgcaaaccattgcatacatcaaactcccaactg |
1116 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12934489 |
tgttcttttcccggattggaaagaaacctgctaacaactccaactgcatgagcaatatctggcctggtgcaaaccattgcatacatcaaactcccaactg |
12934390 |
T |
|
| Q |
1117 |
ctgaggagtaaggtattgcaaccatagcttctttttcatcttgactagtaggacaactcactctgctgagtttaaagtgattggctaacggcgtgctaac |
1216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
12934389 |
ctgaggagtaaggtattgcaaccatagcttctttttcatcttgactagtaggacaactcactctgttgagtttaaagtgattggctaacggcgtgctaac |
12934290 |
T |
|
| Q |
1217 |
tggtttagcacccttcatgttgaatctttctagaacccggtccacatactgttgttgtgacgaccatagctttctagcttttcggtctcgcaaaatcttc |
1316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12934289 |
tggtttagcacccttcatgttgaatctttctagaacccggtccacatactgttgttgtgacaaccatagctttctagcttttcggtctcgcaaaatcttc |
12934190 |
T |
|
| Q |
1317 |
atgcctaagatttgctttgcagggcctaggtttttcatgtcaaaggattttgacaattccttcttcaaatcaccaatcatatcctcgtcttgccccacta |
1416 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
12934189 |
atgcctaagatttgctttgcagggcctagatttttcatgtcaaaggattttgacaattccttcttcaaatcaccaatcatatccttgtcttgccccacta |
12934090 |
T |
|
| Q |
1417 |
tcaacatatcatctacatataacagaaggatgatgaatttgttacctcgaaatgttttgacatatacacaatgatctgcatctgtcttggcatattcctg |
1516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |
|
|
| T |
12934089 |
tcaacatatcatctacatataacagaaggatgatgaatttgttacctcgaaatgttttgacatatacacaatgatctgcatctgtcttggtatattcatg |
12933990 |
T |
|
| Q |
1517 |
actcatcatgaacgagtcaaatttcttataccattgtctaggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaggtgctcctttcga |
1616 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
12933989 |
actcatcatgaacgagtcaaatttcttataccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcga |
12933890 |
T |
|
| Q |
1617 |
gtcttctcaaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaatgcagtctttacgtccatttgttcaagctccaaatcca |
1716 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
12933889 |
gtcttctcaaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatccatttgttcaagctccaaatcca |
12933790 |
T |
|
| Q |
1717 |
agctagcaaccaatccaagtataactcgaattgaactcatcttaacaactgaagagaagatttcatcaaaatctattcctcgcttttgtccaaaaccttt |
1816 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12933789 |
agctagcaaccaatccgagtataactcgaattgaactcatcttaacaactggagagaagatttcatcaaaatctattcctcgcttttgtccaaaaccttt |
12933690 |
T |
|
| Q |
1817 |
tacgactaagcgagctttgtacttcactagcttgtcaccatctttcttgagcttgaacacccatttatttttcaaggcttttctgccttcaggaagtttc |
1916 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
12933689 |
tacgactaagcgagctttgtacttcactagcttgtcaccatctttcttgagcttgaacacccatttattcttcaaggcttttctgccttcaggaagtttc |
12933590 |
T |
|
| Q |
1917 |
acaagttcataagtatcatttttctgcaatgaatccatctcttcttgcattgctttcatcca |
1978 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12933589 |
acaagttcataagtatcatttttctgcaatgaatccatctcttcttgcattgctttcatcca |
12933528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 100 - 513
Target Start/End: Complemental strand, 12931040 - 12930629
Alignment:
| Q |
100 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnn--tgaacac |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
12931040 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcgataaaaaaatgaacac |
12930941 |
T |
|
| Q |
198 |
caatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12930940 |
caatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc |
12930841 |
T |
|
| Q |
298 |
cactctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttataga |
397 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
12930840 |
cactctctcacacacaca----agagatacaatatagtgtttcccgtgagacctacttttattctaatgctattattttatagcacctagaagttataga |
12930745 |
T |
|
| Q |
398 |
gatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcacacacttctacacacacagaagctttgtattc |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
12930744 |
gatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctcacacacttctacacacacagaagctttgtattt |
12930645 |
T |
|
| Q |
498 |
tcacttctgcttcaat |
513 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
12930644 |
tcacttctgcttcaat |
12930629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 299; E-Value: 1e-167
Query Start/End: Original strand, 99 - 513
Target Start/End: Complemental strand, 12935787 - 12935375
Alignment:
| Q |
99 |
ctgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnn--tgaaca |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||| |||||| |
|
|
| T |
12935787 |
ctgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaattcaaaagaaactggatcttgcagcgcagcggtagcgataaaaaaatgaaca |
12935688 |
T |
|
| Q |
197 |
ccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctct |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12935687 |
ccaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctct |
12935588 |
T |
|
| Q |
297 |
ccactctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatag |
396 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
12935587 |
ccactctctcacacacaca----agagatacaatatagtgtttcccgtgagacctacttttactctaatgctattattttatagcacctagaagttatag |
12935492 |
T |
|
| Q |
397 |
agatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcacacacttctacacacacagaagctttgtatt |
496 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
12935491 |
agatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctcacacacttctacacacacagaagctttgtatt |
12935392 |
T |
|
| Q |
497 |
ctcacttctgcttcaat |
513 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
12935391 |
ttcacttctgcttcaat |
12935375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 104; E-Value: 5e-51
Query Start/End: Original strand, 502 - 754
Target Start/End: Complemental strand, 17124139 - 17123887
Alignment:
| Q |
502 |
ttctgcttcaatgctttccttcaattccattgcctctatttataggggaaatgagccgtaagagttggatttggttcacacactcttacaccaaaagtca |
601 |
Q |
| |
|
|||| |||| ||||||||||||| | |||||| ||||||||||| | ||| ||||||||||||| || || ||||||| | ||||||||||||||||| |
|
|
| T |
17124139 |
ttctacttcgatgctttccttcattgccattgactctatttataaga-aaacaagccgtaagagtttgaattagttcaca-attcttacaccaaaagtca |
17124042 |
T |
|
| Q |
602 |
tggtattcaaagtgtgaaacttgaaatgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctccaccgtaagctatatca |
701 |
Q |
| |
|
| ||||||||||||||||||| |||||||||||| | ||||||||||||||| |||||| || ||||||||||| ||||||||| ||||||||| | |
|
|
| T |
17124041 |
taacattcaaagtgtgaaacttggaatgaattgcaaacattcacacttttctgctaagcaagataagcctagccatgcctctccaccttaagctatacta |
17123942 |
T |
|
| Q |
702 |
tagctttcctatttgtagaaa--aatgcatccttgcattaaataggtagaagact |
754 |
Q |
| |
|
||| ||||||||||||||||| ||||| ||||||||||||||| ||||||||| |
|
|
| T |
17123941 |
tagttttcctatttgtagaaaataatgcttccttgcattaaataaatagaagact |
17123887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000003
Query Start/End: Original strand, 235 - 305
Target Start/End: Original strand, 26504985 - 26505055
Alignment:
| Q |
235 |
aaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactctct |
305 |
Q |
| |
|
|||||||| | ||||||||| |||||||||| |||||| |||| |||||||||||||||| || ||||||| |
|
|
| T |
26504985 |
aaaaccacagtacaaactccaaaaaatattcaactataataaaaaatattacaatattctttcaactctct |
26505055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000005
Query Start/End: Original strand, 191 - 303
Target Start/End: Complemental strand, 15589060 - 15588948
Alignment:
| Q |
191 |
tgaacaccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaata |
290 |
Q |
| |
|
|||||| ||||||||| || ||||||||||| || |||| |||||| || | ||||||||| ||||||||| |||| ||| ||| |||||||||| | |
|
|
| T |
15589060 |
tgaacatcaatatttattttgaaaaaccctctattaatgagagaaaaatcaagtgacaaactctaaaaaatatttcactttatcaaacaatattacaaca |
15588961 |
T |
|
| Q |
291 |
ttctctccactct |
303 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
15588960 |
ttttctccactct |
15588948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 688 - 754
Target Start/End: Complemental strand, 17121801 - 17121733
Alignment:
| Q |
688 |
cgtaagctatatcatagctttcctatttgtaga--aaaatgcatccttgcattaaataggtagaagact |
754 |
Q |
| |
|
|||||||||| |||| |||||||||||||||| ||||||| ||||||||||||||| ||||||||| |
|
|
| T |
17121801 |
cgtaagctatgccatatctttcctatttgtagaaaaaaatgcttccttgcattaaatacatagaagact |
17121733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000008
Query Start/End: Original strand, 760 - 816
Target Start/End: Complemental strand, 12930390 - 12930336
Alignment:
| Q |
760 |
caattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggcca |
816 |
Q |
| |
|
||||| ||||||| |||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
12930390 |
caattgcttgtagcaattgtctttggctgg--acataacccacacgtggtggggcca |
12930336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000008
Query Start/End: Original strand, 760 - 816
Target Start/End: Complemental strand, 12935136 - 12935082
Alignment:
| Q |
760 |
caattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggcca |
816 |
Q |
| |
|
||||| ||||||| |||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
12935136 |
caattgcttgtagcaattgtctttggctgg--acataacccacacgtggtggggcca |
12935082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000008
Query Start/End: Original strand, 108 - 153
Target Start/End: Original strand, 26504850 - 26504895
Alignment:
| Q |
108 |
tcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaa |
153 |
Q |
| |
|
|||||||| |||| | ||||||||||||||||| |||||||||||| |
|
|
| T |
26504850 |
tcgacgagtttaatggaagtgtaaattaaaatttcaaaatccaaaa |
26504895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 1074; Significance: 0; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 1074; E-Value: 0
Query Start/End: Original strand, 818 - 1978
Target Start/End: Complemental strand, 14177959 - 14176798
Alignment:
| Q |
818 |
atttttgcaatttagattgccaagatacagctccccctgcaaaagtaaacacaattcttgaagtagactttctaccatccaggtcacctgccatatccgc |
917 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14177959 |
atttttgcaatttagattgccaagatacagctccccctgcaaaagtaaacacaattcctgaagtagactttctaccatccaggtcacctgccatatccgc |
14177860 |
T |
|
| Q |
918 |
ctctgtgtagcctttcaaaatcgaatctgatcctccaaagcataagcacttattagagcttcctttcagatacctcaagatccacttcacagcttcccaa |
1017 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14177859 |
atctgtgtagcctttcaaaatcgaatttgatcctccaaagcataagcacttattagagcttcctttcagatacctcaagatccacttcacagcttcccag |
14177760 |
T |
|
| Q |
1018 |
tgttcttttcccggattg-aaagaaacctgctaacaactccaactgcacgagcaatatctggcctggtgcaaaccattgcatacatcaaactcccaactg |
1116 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14177759 |
tgttcttttcccggattggaaagaaacctgctaacaactccaactacatgagcaatatctggcctggtgcaaaccattgcatacatcaaactcccaactg |
14177660 |
T |
|
| Q |
1117 |
ctgaggagtaaggtattgcaaccatagcttctttttcatcttgactagtaggacaactcactctgctgagtttaaagtgattggctaacggcgtgctaac |
1216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
14177659 |
ctgaggagtaaggtattgcaaccatagcttctttttcatcttgactagtaggacaactcactatgctgagtttaaagtgattggctaacggtgtgctaac |
14177560 |
T |
|
| Q |
1217 |
tggtttagcacccttcatgttgaatctttctagaacccggtccacatactgttgttgtgacgaccatagctttctagcttttcggtctcgcaaaatcttc |
1316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14177559 |
tggtttagcacccttcatgttgaatctttctagaacccggtccacatactgttgttgtgacaaccatagctttctagcttttcggtctcgcaaaatcttc |
14177460 |
T |
|
| Q |
1317 |
atgcctaagatttgctttgcagggcctaggtttttcatgtcaaaggattttgacaattccttcttcaaatcaccaatcatatcctcgtcttgccccacta |
1416 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14177459 |
atgcctaagatttgctttgcagggcctagatttttcatgtcaaaggattttgacaattccttcttcaaatcaccaatcatatcctcgtcttgccccacta |
14177360 |
T |
|
| Q |
1417 |
tcaacatatcatctacatataacagaaggatgatgaatttgttacctcgaaatgttttgacatatacacaatgatctgcatctgtcttggcatattcctg |
1516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |
|
|
| T |
14177359 |
tcaacatatcatctacatataacagaaggatgatgaatttgttacctcgaaatgttttgacatatacacaatgatctgcatctgtcttggtatattcatg |
14177260 |
T |
|
| Q |
1517 |
actcatcatgaacgagtcaaatttcttataccattgtctaggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaggtgctcctttcga |
1616 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
14177259 |
actcatcatgaacgagtcgaatttcttataccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcga |
14177160 |
T |
|
| Q |
1617 |
gtcttctcaaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaatgcagtctttacgtccatttgttcaagctccaaatcca |
1716 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
14177159 |
gtcttctcaaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatccatttgttcaagctccaaatcca |
14177060 |
T |
|
| Q |
1717 |
agctagcaaccaatccaagtataactcgaattgaactcatcttaacaactgaagagaagatttcatcaaaatctattcctcgcttttgtccaaaaccttt |
1816 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14177059 |
agctagcaactaatccgagtataactcgaattgaactcatcttaacaactggagagaagatttcatcaaaatctattcctcgcttttgtccaaaaccttt |
14176960 |
T |
|
| Q |
1817 |
tacgactaagcgagctttgtacttcactagcttgtcaccatctttcttgagcttgaacacccatttatttttcaaggcttttctgccttcaggaagtttc |
1916 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
14176959 |
tacgactaagcgagctttgtacttcactagcttgtcaccatctttcttgagcttgaacacccatttattcttcaaggcttttctgccttcaggaagtttc |
14176860 |
T |
|
| Q |
1917 |
acaagttcataagtatcatttttctgcaatgaatccatctcttcttgcattgctttcatcca |
1978 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14176859 |
acaagttcataagtatcatttttctgcaatgaatccatctcttcttgcattgctttcatcca |
14176798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 1057; E-Value: 0
Query Start/End: Original strand, 818 - 1978
Target Start/End: Original strand, 28607914 - 28609078
Alignment:
| Q |
818 |
atttttgcaatttagattgccaagatacagctccccctgcaaaagtaaacacaattcttgaagtagactttctaccatccaggtcacctgccatatccgc |
917 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
28607914 |
atttttgcaatttagattgccaagatacagctccccctgcaaaagtaaacacaattcctgaagtagactttctaccatccaggtcacctgccatatcagc |
28608013 |
T |
|
| Q |
918 |
ctctgtgtagcctttcaaaatcgaatctgatcctccaaagcataagcacttattagagcttcctttcagatacctcaagatccacttcacagcttcccaa |
1017 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28608014 |
atctgtgtaggctttcaaaatcgaatttgatcctccaaagcataagcacttattagagcttcctttcagatacctcaagatccacttcacagcttcccaa |
28608113 |
T |
|
| Q |
1018 |
tgttctttt-cccggattg-aaagaaacctgctaacaactccaactgcacgagcaatatctggcctggtgcaaaccattgcatacatcaaactcccaact |
1115 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28608114 |
tgttctttttcccggattggaaagaaacctgctaacaactccaactgcatgagcaatatctggcctggtgcaaaccattgcatacatcaaactcccaact |
28608213 |
T |
|
| Q |
1116 |
gctgaggagtaaggtattgcaaccatagcttctttt-tcatcttgactagtaggacaactcactctgctgagtttaaagtgattggctaacggcgtgcta |
1214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28608214 |
gctgaggagtaaggtattgcaaccatagcttcttttttcatcttgactagtaggacaactcactctgctgagtttaaagtgattggctaacggcgtgcta |
28608313 |
T |
|
| Q |
1215 |
actggtttagcacccttcatgttgaatctttctagaacccggtccacatactgttgttgtgacgaccatagctttctagcttttcggtctcgcaaaatct |
1314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
28608314 |
actggtttagcacccttcatgttgaatctttctagaacccggtccacatactgttgttgtgacaaccatagctttctagcttttcggtctcgcaaaatct |
28608413 |
T |
|
| Q |
1315 |
tcatgcctaagatttgctttgcagggcctaggtttttcatgtcaaaggattttgacaattccttcttcaaatcaccaatcatatcctcgtcttgccccac |
1414 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28608414 |
tcatgcctaagatttgctttgcagggcctagatttttcatgtcaaaggattttgacaattccttcttcaaatcaccaatcatatcctcgtcttgccccac |
28608513 |
T |
|
| Q |
1415 |
tatcaacatatcatctacatataacagaaggatgatgaatttgttacctcgaaatgttttgacatatacacaatgatctgcatctgtcttggcatattcc |
1514 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
28608514 |
tatcaacatatcatctacatataacagaatgatgatgaatttgttacctcgaaatgttttgacatatacacaatgatctgcatctgtcttggtatattca |
28608613 |
T |
|
| Q |
1515 |
tgactcatcatgaacgagtcaaatttcttataccattgtctaggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaggtgctcctttc |
1614 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
28608614 |
tgactcatcatgaacgagtcaaatttcttataccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttc |
28608713 |
T |
|
| Q |
1615 |
gagtcttctcaaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaatgcagtctttacgtccatttgttcaagctccaaatc |
1714 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
28608714 |
gagtcttcttaaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatccatttgttcaagctccaaatc |
28608813 |
T |
|
| Q |
1715 |
caagctagcaaccaatccaagtataactcgaattgaactcatcttaacaactgaagagaagatttcatcaaaatctattcctcgcttttgtccaaaacct |
1814 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28608814 |
caagctagcaactaatccgagtataactcgaattgaactcatcttaacaactggagagaagatttcatcaaaatctattcctcgcttttgtccaaaacct |
28608913 |
T |
|
| Q |
1815 |
tttacgactaagcgagctttgtacttcactagcttgtcaccatctttcttgagcttgaacacccatttatttttcaaggcttttctgccttcaggaagtt |
1914 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
28608914 |
tttacgactaagcgagctttgtacttcactagcttgtcaccatctttcttgagcttgaacacccatttattcttcaaggcttttctgccttcaggaagtt |
28609013 |
T |
|
| Q |
1915 |
tcacaagttcataagtatca-tttttctgcaatgaatccatctcttcttgcattgctttcatcca |
1978 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28609014 |
tcacaagttcataagtatcattttttctgcaatgaatccatctcttcttgcattgctttcatcca |
28609078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 591; E-Value: 0
Query Start/End: Original strand, 100 - 816
Target Start/End: Original strand, 28611568 - 28612283
Alignment:
| Q |
100 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnn---tgaaca |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
28611568 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcgataaaaaaaatgaaca |
28611667 |
T |
|
| Q |
197 |
ccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctct |
296 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28611668 |
ccaatatttaacgtgaaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctct |
28611767 |
T |
|
| Q |
297 |
ccactctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatag |
396 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
28611768 |
ccactctctcacacacaca----agagatacaatatagtgtttcccgtgagacctacttctattctaatgctattattttatagcacctagaagttatag |
28611863 |
T |
|
| Q |
397 |
agatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcacacacttctacacacacagaagctttgtatt |
496 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
28611864 |
agatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctcacacacttctacacacacagaagctttgtatt |
28611963 |
T |
|
| Q |
497 |
ctcacttctgcttcaatgctttccttcaattccattgcctctatttataggggaaatgagccgtaagagttggatttggttcacacactcttacaccaaa |
596 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28611964 |
ttcacttctgcttcgatgctttccttcaattccattgcctctatttataggggaaatgagccgtaagagttggatttggttcacacactcttacaccaaa |
28612063 |
T |
|
| Q |
597 |
agtcatggtattcaaagtgtgaaacttgaaatgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctccaccgtaagcta |
696 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28612064 |
agtcatgacattcagagtgtgaaacttgaaatgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctccaccgtaagcta |
28612163 |
T |
|
| Q |
697 |
tatcatagctttcctatttgtagaaaaatgcatccttgcattaaataggtagaagactatttacaattacttgtagtaattgtctttggctggaaacaat |
796 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28612164 |
taccatagctttcctatttgtagaaaaatgcatccttgcattaaataggtagaagactatttacaattacttgtagtaattgtctttggctggaaacaat |
28612263 |
T |
|
| Q |
797 |
acccacacgtggtggggcca |
816 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
28612264 |
acccacacgtggtggggcca |
28612283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 100 - 816
Target Start/End: Original strand, 28606806 - 28607521
Alignment:
| Q |
100 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnn---tgaaca |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||| |
|
|
| T |
28606806 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcgataaaaaaaattaaca |
28606905 |
T |
|
| Q |
197 |
ccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctct |
296 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28606906 |
ccaatatttaacgtgaaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctct |
28607005 |
T |
|
| Q |
297 |
ccactctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatag |
396 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
28607006 |
ccactctctcacacacaca----agagatacaatatagtgtttcccgtgagacctacttctattctaatgctattattttatagcacctagaagttatag |
28607101 |
T |
|
| Q |
397 |
agatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcacacacttctacacacacagaagctttgtatt |
496 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
28607102 |
agatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctcacacacttctacacacacagaagctttgtatt |
28607201 |
T |
|
| Q |
497 |
ctcacttctgcttcaatgctttccttcaattccattgcctctatttataggggaaatgagccgtaagagttggatttggttcacacactcttacaccaaa |
596 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28607202 |
ttcacttctgcttcgatgctttccttcaattccattgcctctatttataggggaaatgagccgtaagagttggatttggttcacacactcttacaccaaa |
28607301 |
T |
|
| Q |
597 |
agtcatggtattcaaagtgtgaaacttgaaatgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctccaccgtaagcta |
696 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28607302 |
agtcatgacattcagagtgtgaaacttgaaatgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctccaccgtaagcta |
28607401 |
T |
|
| Q |
697 |
tatcatagctttcctatttgtagaaaaatgcatccttgcattaaataggtagaagactatttacaattacttgtagtaattgtctttggctggaaacaat |
796 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28607402 |
taccatagctttcctatttgtagaaaaatgcatccttgcattaaataggtagaagactatttacaattacttgtagtaattgtctttggctggaaacaat |
28607501 |
T |
|
| Q |
797 |
acccacacgtggtggggcca |
816 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
28607502 |
acccacacgtggtggggcca |
28607521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 100 - 511
Target Start/End: Complemental strand, 14179056 - 14178646
Alignment:
| Q |
100 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnn---tgaaca |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
14179056 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcaataaaaaaaatgaaca |
14178957 |
T |
|
| Q |
197 |
ccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctct |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14178956 |
ccaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctct |
14178857 |
T |
|
| Q |
297 |
ccactctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatag |
396 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
14178856 |
ccactctctcacacacaca----agagatacaatatagtgtttcccgtgagacctacttctattctaatgctattattttatagcacctagaagttatag |
14178761 |
T |
|
| Q |
397 |
agatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcacacacttctacacacacagaagctttgtatt |
496 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
14178760 |
agatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctcacacacttctacacacacagaagctttgtatt |
14178661 |
T |
|
| Q |
497 |
ctcacttctgcttca |
511 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
14178660 |
ttcacttctgcttca |
14178646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 100 - 511
Target Start/End: Complemental strand, 14174302 - 14173892
Alignment:
| Q |
100 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnn---tgaaca |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
14174302 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagtgataaaaaaaatgaaca |
14174203 |
T |
|
| Q |
197 |
ccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctct |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14174202 |
ccaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctct |
14174103 |
T |
|
| Q |
297 |
ccactctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatag |
396 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
14174102 |
ccactctctcacacacaca----agagatacaatatagtgtttcccgtgagacctacttctattctaatgctattattttatagcacctagaagttatag |
14174007 |
T |
|
| Q |
397 |
agatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcacacacttctacacacacagaagctttgtatt |
496 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
14174006 |
agatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctcacacacttctacacacacagaaactttgtatt |
14173907 |
T |
|
| Q |
497 |
ctcacttctgcttca |
511 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
14173906 |
ttcacttctgcttca |
14173892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 269; E-Value: 1e-149
Query Start/End: Original strand, 100 - 515
Target Start/End: Complemental strand, 44161949 - 44161538
Alignment:
| Q |
100 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnn---tgaaca |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
44161949 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcgataaaaaaaatgaaca |
44161850 |
T |
|
| Q |
197 |
ccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctct |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
44161849 |
ccaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaat--tctct |
44161752 |
T |
|
| Q |
297 |
ccactctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatag |
396 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
44161751 |
ccactctcttacacacaca----agagatacaatatagtgtttcccgtaagacctacttctattctaatgctattattttatagcacctagaagttatag |
44161656 |
T |
|
| Q |
397 |
agatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcacacacttctacacacacagaagctttgt-at |
495 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||| ||||||||||||||||| | |
|
|
| T |
44161655 |
agatgatacccacccggtgtatttttcccacactctctggatttactcaacactctattattcctctcacacacctct--acacacagaagctttgtgtt |
44161558 |
T |
|
| Q |
496 |
tctcacttctgcttcaatgc |
515 |
Q |
| |
|
| ||||||||||||| |||| |
|
|
| T |
44161557 |
tttcacttctgcttcgatgc |
44161538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 100 - 514
Target Start/End: Complemental strand, 11104829 - 11104424
Alignment:
| Q |
100 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnntgaacacca |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
11104829 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagctgtagcgataaaaatgaacacca |
11104730 |
T |
|
| Q |
200 |
atatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctcca |
299 |
Q |
| |
|
||||||||| | ||||| ||||||||| ||||| ||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
11104729 |
atatttaacatagaaaatcctctaatatcgagggtaaa-ccacgggacaaactccgaaaaatattccaccatatctaagaatattacaatattctctcca |
11104631 |
T |
|
| Q |
300 |
ctctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagaga |
399 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| ||| |||||| ||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
11104630 |
ctctcttacacacaa-----agagatacaatatagtgtttcccgtgagacccactcctattcaaatgctattattttataacacctagaagttatagaga |
11104536 |
T |
|
| Q |
400 |
tgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcacacacttctacacacacagaagctttgtattctc |
499 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||| | |
|
|
| T |
11104535 |
tgatatccacccggtgtatttttcctacactctctggatttactcaacactctattttttctctcacacacttcta--cacatagaagctttgtatt-tg |
11104439 |
T |
|
| Q |
500 |
acttctgcttcaatg |
514 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
11104438 |
acttctgcttcaatg |
11104424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 140; E-Value: 2e-72
Query Start/End: Original strand, 100 - 404
Target Start/End: Original strand, 48826702 - 48827000
Alignment:
| Q |
100 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnnt-gaacacc |
198 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||||||| |||||| ||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
48826702 |
tgttgggatcgacgagcttaacgcaattgtaaattaaaatttcaaaattcaa--gagattggatcttgcagcgcagcggtagcgatagaaaaagaacacc |
48826799 |
T |
|
| Q |
199 |
aatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctcc |
298 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
48826800 |
aatatttaacgtggaaaatcctctaataccgagggaaaaatcacgggacaa-ctccgaaaaatattccactatattaaagaatattacaatattctcttc |
48826898 |
T |
|
| Q |
299 |
actctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagag |
398 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||| ||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
48826899 |
gctctct----tacacacacaagagatacaatatagtgtttcccgtgagattcactcctatttgaatgctattattttatagcacctagaagttatagag |
48826994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 63; E-Value: 2e-26
Query Start/End: Original strand, 127 - 297
Target Start/End: Original strand, 48708086 - 48708256
Alignment:
| Q |
127 |
tgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnntgaacaccaatatttaacgtggaaaaccctctaata |
226 |
Q |
| |
|
||||||||||||||||||||| |||||| |||| ||||| || ||||| ||| || | || ||||||||||||| || ||||| || ||||| |
|
|
| T |
48708086 |
tgtaaattaaaattccaaaatataaaagaaattgaatcttacaacgcagtggtggcgataaaattaaataccaatatttaacatgaaaaactctataata |
48708185 |
T |
|
| Q |
227 |
ctgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc |
297 |
Q |
| |
|
|| || ||||||||||| |||||||||| ||||||||| || ||||||||| ||||||||||||||||||| |
|
|
| T |
48708186 |
ctaagagaaaaaccacgtgacaaactccaaaaaatatttcattatattaaaaaatattacaatattctctc |
48708256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 46; E-Value: 2e-16
Query Start/End: Original strand, 212 - 305
Target Start/End: Original strand, 24726288 - 24726381
Alignment:
| Q |
212 |
gaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactctct |
305 |
Q |
| |
|
||||||| ||||||| |||||||| ||||| ||||||||| ||||||||||||| |||||||||||| || | ||||||||||||| ||||| |
|
|
| T |
24726288 |
gaaaaccatctaatatcaagggaaaagccacgagacaaactctgaaaaatattccattatattaaagaacataataatattctctccattctct |
24726381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000005
Query Start/End: Original strand, 1624 - 1699
Target Start/End: Original strand, 6802395 - 6802470
Alignment:
| Q |
1624 |
caaatccttctggttgaaccatgtagatctcttcatctaaatctcca-tgaagaaatgcagtctttacgtccatttg |
1699 |
Q |
| |
|
|||| |||||||||||| |||||||||| ||||| |||||||||||| | |||||| ||||||||||| |||||||| |
|
|
| T |
6802395 |
caaaaccttctggttgatccatgtagatttcttcctctaaatctccatttaagaaa-gcagtctttacatccatttg |
6802470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 922; Significance: 0; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 922; E-Value: 0
Query Start/End: Original strand, 818 - 1978
Target Start/End: Complemental strand, 15300475 - 15299318
Alignment:
| Q |
818 |
atttttgcaatttagattgccaagatacagctccccctgcaaaagtaaacacaattcttgaagtagactttctaccatccaggtcacctgccatatccgc |
917 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
15300475 |
atttttgcaatttagattgccaagatatagctcaccctgcaaaagcaaacacaattcctgaagcagactttctaccatccaggtcacctgccatatccgc |
15300376 |
T |
|
| Q |
918 |
ctctgtgtagcctttcaaaatcgaatctgatcctccaaagcataagcacttattagagcttcctttcagatacctcaagatccacttcacagcttcccaa |
1017 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
15300375 |
atatgtgtagcctttcaaaatcgaatctgatcctccaaagcataagcacttattagagcttcctttcagatacctcaagatccacttcacaacttcccaa |
15300276 |
T |
|
| Q |
1018 |
tgttcttttcccggattg-aaagaaacctgctaacaactccaactgcacgagcaatatctggcctggtgcaaaccattgcatacatcaaactcccaactg |
1116 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15300275 |
tgttcttttcccggattggaaagaaacctgctaacaactccaactgcatgagcaatatctggcctggtgcaaaccattgcatacatcaaactcccaactg |
15300176 |
T |
|
| Q |
1117 |
ctgaggagtaaggtattgcaaccatagcttctttttcatcttgactagtaggacaactcactctgctgagtttaaagtgattggctaacggcgtgctaac |
1216 |
Q |
| |
|
||||||||||||||||| || ||||||||| ||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
15300175 |
ctgaggagtaaggtatttcagccatagcttgttttttatcttgactagtaggacaacttactctactgagtttaaagtgattggctaacggcgtgctaac |
15300076 |
T |
|
| Q |
1217 |
tggtttagcacccttcatgttgaatctttctagaacccggtccacatactgttgttgtgacgaccatagctttctagcttttcggtctcgcaaaatcttc |
1316 |
Q |
| |
|
| ||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||| ||| |||||||||||| ||||| |
|
|
| T |
15300075 |
tagtttagcaccctttatgttgaatctttctagaacccgttccacttactgttgttgtgacaaccatagctttctagatttccggtctcgcaaagtcttc |
15299976 |
T |
|
| Q |
1317 |
atgcctaagatttgctttgcagggcctaggtttttcatgtcaaaggattttgacaattccttcttcaaatcaccaatcatatcctcgtcttgccccacta |
1416 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15299975 |
atgcctaagatttgctttgcagggcctagatttttcatgtcgaaggattttgacaattcatttttcaaatcaccaatcatatcctcgtcttgccccacta |
15299876 |
T |
|
| Q |
1417 |
tcaacatatcatctacatataacagaaggatgatgaatttgttacctcgaaatgttttgacatatacacaatgatctgcatctgtcttggcatattcctg |
1516 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| || |
|
|
| T |
15299875 |
tcaacttatcatctacatataacagaaggatgataaatttgttacctcgaaatattttgacatatacacaatgatctgcatctgtcttggtatattcatg |
15299776 |
T |
|
| Q |
1517 |
actcatcatgaacgagtcaaatttcttataccattgtctaggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaggtgctcctttcga |
1616 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
15299775 |
actcatcatgaacgagtaaaatttcttataccattgtcttggtgcttgtcttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcga |
15299676 |
T |
|
| Q |
1617 |
gtcttctcaaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaatgcagtctttacgtccatttgttcaagctccaaatcca |
1716 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
15299675 |
gtcttctcaaatccttctggttgaaccatgtagatctcttcatctaaatatccatgaag------agtctttacgtccatttgttcaagctccaaaccca |
15299582 |
T |
|
| Q |
1717 |
agctagcaaccaatccaagtataactcgaattgaactcatcttaacaactg--aagagaagatttcatcaaaatctattcctcgcttttgtccaaaacct |
1814 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15299581 |
agctagcaaccaatccgagtataactcgaattgaactcatcttaacaactggagagagaagatttcatcaaaatctattcctcgcttttgtccaaaacct |
15299482 |
T |
|
| Q |
1815 |
tttacgactaagcgagctttgtacttcactagcttgtcaccatctttcttgagcttgaacacccatttatttttcaaggcttttctgccttcaggaagtt |
1914 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||| ||||||||| | |
|
|
| T |
15299481 |
tttacgactaagagagctttgtatttcactagcttgtcactatctttcttgagcttgaacacccatttattctttaaggcttttctgatttcaggaagct |
15299382 |
T |
|
| Q |
1915 |
tcacaagttcataagtatcatttttctgcaatgaatccatctcttcttgcattgctttcatcca |
1978 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
15299381 |
tcacaagttcataagtatcatttttctgcaaggaatccatctcttcttacattgctttcatcca |
15299318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 98 - 601
Target Start/End: Original strand, 37040424 - 37040927
Alignment:
| Q |
98 |
tctgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnn---tgaa |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||| |
|
|
| T |
37040424 |
tctgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaaagactggatcttgcagcgcagcggtagcgataaaaaaaatgaa |
37040523 |
T |
|
| Q |
195 |
caccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattct |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
37040524 |
caccaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatatttt |
37040623 |
T |
|
| Q |
295 |
ctccactctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttat |
394 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
37040624 |
ctccactctctcacacacaca----agagatacaatatagtgttttccgtgagacctacttctattctaatgctattattttatagcacctagaagttat |
37040719 |
T |
|
| Q |
395 |
agagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcacacacttctacacacacagaagctttgta |
494 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
37040720 |
agagatgatacccacccgatgtatttttcccacactctctggatttactcaacactctatttttcctctcacacacttctacacacacagaagctttgta |
37040819 |
T |
|
| Q |
495 |
ttctcacttctgcttcaatgctttccttcaattccattgcctctatttataggggaaatg-agccgtaagagttggatttggttcacacactcttacacc |
593 |
Q |
| |
|
|| ||||||||||||||||||||||||||| | ||||| ||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37040820 |
ttttcacttctgcttcaatgctttccttcactatcattgtctctatttataagagaaatgaagccgtaagagttggatttggttcacacactcttacact |
37040919 |
T |
|
| Q |
594 |
aaaagtca |
601 |
Q |
| |
|
|||||||| |
|
|
| T |
37040920 |
aaaagtca |
37040927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 175; E-Value: 2e-93
Query Start/End: Original strand, 100 - 519
Target Start/End: Complemental strand, 15290594 - 15290184
Alignment:
| Q |
100 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaa-gagattggatcttgcagcgcagcggtagcnnnnnnnn---tgaac |
195 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||| |||| ||||| |
|
|
| T |
15290594 |
tgttgggctcgacgagcttaacgcaattgtaaattaaaatttcaaaatccaaaaagagattggatcttgcagcgcagccttagcgataaaaaaaatgaac |
15290495 |
T |
|
| Q |
196 |
accaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctc |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||| ||| || |||||||||||| |||||||||||||||||||| |
|
|
| T |
15290494 |
accaatatttaacgtggaaaaccctctaataccgaggtataaaccacgggacaaactccaaaagattttccactatatttaagaatattacaatattctc |
15290395 |
T |
|
| Q |
296 |
tccactctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttata |
395 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||||| ||| |||||| |||||||| |||| ||||||||||||||||| |
|
|
| T |
15290394 |
tccactctct----tacacacacaagagatacaatatagtgttt-ccgtgagacccactcctattcgaatgctat--tatttcagcacctagaagttata |
15290302 |
T |
|
| Q |
396 |
gagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcacacacttctacacacacagaagc---tttg |
492 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||| ||||||||||||||| |||||||||||| |||| |
|
|
| T |
15290301 |
gagatgatacccacccggtgtattttt-ccacactttctggatttagtcaacactcta------ttctcacacacttct--acacacagaagcttttttg |
15290211 |
T |
|
| Q |
493 |
tattctcacttctgcttcaatgctttc |
519 |
Q |
| |
|
|||| ||||||||||| | |||||||| |
|
|
| T |
15290210 |
tattttcacttctgctacgatgctttc |
15290184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 122; E-Value: 1e-61
Query Start/End: Original strand, 100 - 513
Target Start/End: Complemental strand, 12099361 - 12098958
Alignment:
| Q |
100 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnntgaacacca |
199 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||| || || |||| |||| | || |
|
|
| T |
12099361 |
tgttgggctcgacgagtttaacgcgagtgtaaattaaaattccaaaatccaaaagagatatgatcttgcagctcaccgatagcgataaaaatgaaaagca |
12099262 |
T |
|
| Q |
200 |
atatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctcca |
299 |
Q |
| |
|
|||||| ||||| ||||||||||||| || |||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
12099261 |
atattttacgtgaaaaaccctctaatgacgaaggaaaaaccaagggacaaactccgaaaaaatttcaactatattaaagaatattacaatattctctcca |
12099162 |
T |
|
| Q |
300 |
ctctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagaga |
399 |
Q |
| |
|
|||||| ||||| ||||||| ||||||| ||||||| ||| |||||| |||| |||||| ||||| |||||| |||||||||||| |
|
|
| T |
12099161 |
ctctct----tacacgcacaagagacacaatattgtgtttctagtgagactcactcctattcaaatgatattattttataacacctaaaagttatagaga |
12099066 |
T |
|
| Q |
400 |
tgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcacacacttctacacacacagaagctttgtattctc |
499 |
Q |
| |
|
|||||| ||| | | |||||| | | | ||||| ||||||||||||||||||||||| | ||||| |||||| ||||||| || ||||||| | || |
|
|
| T |
12099065 |
tgatactcactcaatctatttt--cgaga--ctctgaatttactcaacactctatttttcctttcacatacttct--acacacaaaaactttgtagtttc |
12098972 |
T |
|
| Q |
500 |
acttctgcttcaat |
513 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
12098971 |
acttctacttcaat |
12098958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 73; E-Value: 2e-32
Query Start/End: Original strand, 248 - 479
Target Start/End: Complemental strand, 12082227 - 12082002
Alignment:
| Q |
248 |
aaactccgaaaaatattccactatattaaagaatattacaatattctctccactctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgag |
347 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
12082227 |
aaactccaaaaaatattccactatattaa-gaatattacaatattttctccactctcttacacggaaa----agagatacaatatagtgtttctaatgag |
12082133 |
T |
|
| Q |
348 |
acctacttctattctaatgctattatattatagcacctagaagttatagagatgatacccacccggtgtatttttcccacactctctggatttactcaac |
447 |
Q |
| |
|
|| || |||||| |||| |||||| ||||||| |||||||||||||||||| ||||| ||||| | |||||||||| | | ||||||||||| |||| |
|
|
| T |
12082132 |
actcgctcctattcaaatgttattattttatagcgcctagaagttatagagataatacctacccgatatatttttccc-ctttttctggatttacccaac |
12082034 |
T |
|
| Q |
448 |
actctatttttcttctcacacacttctacaca |
479 |
Q |
| |
|
|||||| |||||| ||||||||||||||||| |
|
|
| T |
12082033 |
actctaattttctgatcacacacttctacaca |
12082002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 50; E-Value: 9e-19
Query Start/End: Original strand, 450 - 519
Target Start/End: Complemental strand, 15302960 - 15302891
Alignment:
| Q |
450 |
tctatttttcttctcacacacttctacacacacagaagctttgtattctcacttctgcttcaatgctttc |
519 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||| |
|
|
| T |
15302960 |
tctatttttgctctcacacacttctacacacacagaagctttgtattttcaattctgcttcgatgctttc |
15302891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 49; E-Value: 4e-18
Query Start/End: Original strand, 985 - 1120
Target Start/End: Complemental strand, 6692801 - 6692665
Alignment:
| Q |
985 |
agatacctcaagatccacttcacagcttcccaatgttcttttcccggatt-gaaagaaacctgctaacaactccaactgcacgagcaatatctggcctgg |
1083 |
Q |
| |
|
||||||||||| ||||| || || ||||||||||| |||| || ||||| || | |||||||||||||||||| |||||| | |||| |||||||| | |
|
|
| T |
6692801 |
agatacctcaaaatccatttaaccgcttcccaatgagctttacctggatttgacataaacctgctaacaactcccactgcatggccaatgtctggccttg |
6692702 |
T |
|
| Q |
1084 |
tgcaaaccattgcatacatcaaactcccaactgctga |
1120 |
Q |
| |
|
| ||||||||||| ||||||||||| |||| |||||| |
|
|
| T |
6692701 |
tacaaaccattgcgtacatcaaacttccaattgctga |
6692665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 47; E-Value: 5e-17
Query Start/End: Original strand, 100 - 182
Target Start/End: Complemental strand, 12084751 - 12084669
Alignment:
| Q |
100 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagc |
182 |
Q |
| |
|
|||||||||| ||||||||||| | || ||||||||||||| |||||||||| ||| ||||||||||| |||||| ||||||| |
|
|
| T |
12084751 |
tgttgggctcaacgagcttaacacgagggtaaattaaaatttcaaaatccaatagacattggatcttgtagcgcaacggtagc |
12084669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000005
Query Start/End: Original strand, 193 - 305
Target Start/End: Original strand, 2757307 - 2757418
Alignment:
| Q |
193 |
aacaccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatatt |
292 |
Q |
| |
|
||||||||||||||| || ||| |||| |||| || | |||||||||| | |||||| | ||||| |||||||||||||| || |||||| || |||| |
|
|
| T |
2757307 |
aacaccaatatttaatatgaaaacccctttaatgcttaaggaaaaaccatgagacaaattttgaaaa-tattccactatatttaaaaatattgcactatt |
2757405 |
T |
|
| Q |
293 |
ctctccactctct |
305 |
Q |
| |
|
||||||||||||| |
|
|
| T |
2757406 |
ctctccactctct |
2757418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000005
Query Start/End: Original strand, 1533 - 1588
Target Start/End: Complemental strand, 6692255 - 6692200
Alignment:
| Q |
1533 |
tcaaatttcttataccattgtctaggtgcttgttttaatccatacaagctcttctt |
1588 |
Q |
| |
|
||||| ||| ||||||||||||| || |||||||||| ||||||||||||||||| |
|
|
| T |
6692255 |
tcaaacttcatataccattgtcttggagcttgttttaggccatacaagctcttctt |
6692200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 1059 - 1105
Target Start/End: Original strand, 33415690 - 33415736
Alignment:
| Q |
1059 |
actgcacgagcaatatctggcctggtgcaaaccattgcatacatcaa |
1105 |
Q |
| |
|
|||||| |||| |||||||| || ||||||||||||||||||||||| |
|
|
| T |
33415690 |
actgcatgagctatatctggtctagtgcaaaccattgcatacatcaa |
33415736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000008
Query Start/End: Original strand, 123 - 160
Target Start/End: Original strand, 2757236 - 2757273
Alignment:
| Q |
123 |
caagtgtaaattaaaattccaaaatccaaaagagattg |
160 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
2757236 |
caagtgtaaattaaaattccaaaattcaaaagaaattg |
2757273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 100 - 816
Target Start/End: Complemental strand, 8539548 - 8538835
Alignment:
| Q |
100 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnn-tgaacacc |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| | |||||| | |
|
|
| T |
8539548 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaattctaaaagagattggatcttgcagcgcagcggtaacaataaaaaatgaacatc |
8539449 |
T |
|
| Q |
199 |
aatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctcc |
298 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
8539448 |
aatatttaacgtggaaaaccctctaataccgagggaaaaatcacgggacaaactccgaaagatattccactatatttaagaatattacaatattatctcc |
8539349 |
T |
|
| Q |
299 |
actctctnnnnnnnnnnnnnnagagatacaatat---agtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttata |
395 |
Q |
| |
|
||||||| ||||||||||||| ||||||||| |||||||| ||| |||||| | ||||||||| ||| |||||||| |||||||| |
|
|
| T |
8539348 |
actctcttacacacaca----agagatacaatattatagtgtttcc-gtgagacccactcctattcgattgctattattttacagcacctaaaagttata |
8539254 |
T |
|
| Q |
396 |
gagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcacacacttctacacacacagaagctttgtat |
495 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||||| ||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
8539253 |
gagatgatacccatccgatgtatttttcccacactctctgaatttactgaacactatatttttcctctcacacacttctacacacacagaagctttgtat |
8539154 |
T |
|
| Q |
496 |
tctcacttctgcttcaatgctttccttcaattccattgcctctatttataggggaaatgagccgtaagagttggatttggttcacacactcttacaccaa |
595 |
Q |
| |
|
| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||| | |||||||| |||||||||||| |
|
|
| T |
8539153 |
tttcacttctgcttcgatgctttccttcaattccat-gcctctatttataggggaaataagccataagagttggaaatagttcacac-ctcttacaccaa |
8539056 |
T |
|
| Q |
596 |
aagtcatggtattcaaagtgtgaaacttgaaatgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctccaccgtaagct |
695 |
Q |
| |
|
|||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
8539055 |
aagtcatgacattcagagtgtgaaacttggaatgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctccaccttaagct |
8538956 |
T |
|
| Q |
696 |
atatcatagctttcctatttgtagaaaaatgcatccttgcattaaataggtagaagactatttacaa-ttacttgtagtaattgtctttggctggaaaca |
794 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||| || ||| || |||||||||||||||||||| |||| |
|
|
| T |
8538955 |
ataccatagctttcctatttgtagaaaaatgcatcattgcattaaatgagtagaagactagttataatttatttatagtaattgtctttggctgg-aaca |
8538857 |
T |
|
| Q |
795 |
atacccacacgtggtggggcca |
816 |
Q |
| |
|
|||||||| |||||||||||| |
|
|
| T |
8538856 |
gtacccacatgtggtggggcca |
8538835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 100 - 513
Target Start/End: Complemental strand, 34907503 - 34907092
Alignment:
| Q |
100 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnn--tgaacac |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
34907503 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcgataaaaaaatgaacac |
34907404 |
T |
|
| Q |
198 |
caatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34907403 |
caatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc |
34907304 |
T |
|
| Q |
298 |
cactctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttataga |
397 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
34907303 |
cactctctcacacacaca----agagatacaatatagtgtttcccgtgagacctacttttattctaatgctattattttatagcacctagaagttataga |
34907208 |
T |
|
| Q |
398 |
gatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcacacacttctacacacacagaagctttgtattc |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
34907207 |
gatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctcacacacttctacacacacagaagctttgtattt |
34907108 |
T |
|
| Q |
498 |
tcacttctgcttcaat |
513 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
34907107 |
tcacttctgcttcaat |
34907092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 516 - 816
Target Start/End: Complemental strand, 34907056 - 34906756
Alignment:
| Q |
516 |
tttccttcaattccattgcctctatttataggggaaatgagccgtaagagttggatttggttcacacactcttacaccaaaagtcatggtattcaaagtg |
615 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
34907056 |
tttctttcaattctattgcctctatttataggggaaatgagccgtaagagttggatttggttcacacactcttacaccaaaagtcatgacattcagagtg |
34906957 |
T |
|
| Q |
616 |
tgaaacttgaaatgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctccaccgtaagctatatcatagctttcctattt |
715 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
34906956 |
tgaaacttgaaatgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctccaccgtaagctataccatagctttcctattt |
34906857 |
T |
|
| Q |
716 |
gtagaaaaatgcatccttgcattaaataggtagaagactatttacaattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggcc |
815 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34906856 |
gtagaaaaattcatccttgcattaaataggtagaagactatttacaattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggcc |
34906757 |
T |
|
| Q |
816 |
a |
816 |
Q |
| |
|
| |
|
|
| T |
34906756 |
a |
34906756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 255; Significance: 1e-141; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 100 - 519
Target Start/End: Original strand, 29106878 - 29107291
Alignment:
| Q |
100 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnntgaacacca |
199 |
Q |
| |
|
||||||| |||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
29106878 |
tgttgggatcgaggagcttaatgcaagtgtaaattaaaattccaaaatccaaaaaagattggatcttgcagcgcagcggtagcgttaaaaatgaacacca |
29106977 |
T |
|
| Q |
200 |
atatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctcca |
299 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29106978 |
atatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctcca |
29107077 |
T |
|
| Q |
300 |
ctctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagaga |
399 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||| |
|
|
| T |
29107078 |
ctctcttacacacaca----agagatacaa-atagtgtttcccgtgagacctacttctattctaatgctattattttttagcacctagaagttataaaga |
29107172 |
T |
|
| Q |
400 |
tgata-cccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcacacacttctacacacacagaagctttgtattct |
498 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
29107173 |
tgataccccacccaatgtatttttcccacactctctggatttactcaaca--ctattttttctctcacacacttctacatacagagaagctttgtatttc |
29107270 |
T |
|
| Q |
499 |
cacttctgcttcaatgctttc |
519 |
Q |
| |
|
|||||||||||| |||||||| |
|
|
| T |
29107271 |
cacttctgcttcgatgctttc |
29107291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 254; E-Value: 1e-140
Query Start/End: Original strand, 100 - 519
Target Start/End: Original strand, 42910993 - 42911408
Alignment:
| Q |
100 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnntgaacacca |
199 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||| | | ||||||||| |
|
|
| T |
42910993 |
tgttgggctcgacgagcttaacgcaagtggaaattaaaattttaaaatccaaaagagattagatcttgcagcgcagcggcaacgataaaaatgaacacca |
42911092 |
T |
|
| Q |
200 |
atatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctcca |
299 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
42911093 |
atatttaacatggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaa-tattccactatatttaagaatattacaatattctctcca |
42911191 |
T |
|
| Q |
300 |
ctctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagaga |
399 |
Q |
| |
|
|||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
42911192 |
ctctctcacacacaca----aaagatacaatatagtgtttcccttgagacctacttctattctaatgctattattttatagcaccaagaagttatagaga |
42911287 |
T |
|
| Q |
400 |
tgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcacacacttctacacacacagaagctttgt-attct |
498 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || | |
|
|
| T |
42911288 |
tgatacccacccagtgtattttttccacactctctggatttactcaacactctattttttctctcacacacttctacacacacagaagctttgtgttttt |
42911387 |
T |
|
| Q |
499 |
cacttctgcttcaatgctttc |
519 |
Q |
| |
|
|||||||||||| |||||||| |
|
|
| T |
42911388 |
cacttctgcttcgatgctttc |
42911408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 1e-20
Query Start/End: Original strand, 985 - 1120
Target Start/End: Complemental strand, 19944751 - 19944615
Alignment:
| Q |
985 |
agatacctcaagatccacttcacagcttcccaatgttcttttcccggatt-gaaagaaacctgctaacaactccaactgcacgagcaatatctggcctgg |
1083 |
Q |
| |
|
||||||||||| ||||| || || ||||||||||| |||| || ||||| || | |||||||||||||||||| |||||| | |||| |||||||| | |
|
|
| T |
19944751 |
agatacctcaaaatccatttaaccgcttcccaatgagctttacctggatttgacataaacctgctaacaactcccactgcatggccaatgtctggccttg |
19944652 |
T |
|
| Q |
1084 |
tgcaaaccattgcatacatcaaactcccaactgctga |
1120 |
Q |
| |
|
| ||||||||||||||||||||||| |||| |||||| |
|
|
| T |
19944651 |
tacaaaccattgcatacatcaaacttccaattgctga |
19944615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 5e-17
Query Start/End: Original strand, 192 - 282
Target Start/End: Original strand, 38997230 - 38997320
Alignment:
| Q |
192 |
gaacaccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaata |
282 |
Q |
| |
|
||||| |||||||| |||| ||||||||||||||| || ||||||| |||||||||||||| ||||||| |||| |||||||||||||| |
|
|
| T |
38997230 |
gaacagcaatattttacgtcgaaaaccctctaatatcgaacgaaaaactacgggacaaactccaaaaaataatccattatattaaagaata |
38997320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 45; E-Value: 9e-16
Query Start/End: Original strand, 100 - 180
Target Start/End: Original strand, 38994699 - 38994779
Alignment:
| Q |
100 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggta |
180 |
Q |
| |
|
||||||||| ||||| ||||| || |||||||||||||||||||||| ||||| | |||||||||||||| ||||||||| |
|
|
| T |
38994699 |
tgttgggcttgacgatcttaatgctagtgtaaattaaaattccaaaacccaaacaaaattggatcttgcagtgcagcggta |
38994779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000005
Query Start/End: Original strand, 1533 - 1588
Target Start/End: Complemental strand, 19944205 - 19944150
Alignment:
| Q |
1533 |
tcaaatttcttataccattgtctaggtgcttgttttaatccatacaagctcttctt |
1588 |
Q |
| |
|
||||| ||| ||||||||||||| || |||||||||| ||||||||||||||||| |
|
|
| T |
19944205 |
tcaaacttcatataccattgtcttggagcttgttttaggccatacaagctcttctt |
19944150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 133; Significance: 3e-68; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 3e-68
Query Start/End: Original strand, 321 - 509
Target Start/End: Complemental strand, 51302306 - 51302118
Alignment:
| Q |
321 |
gagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatgatacccacccggtgtattt |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| |||||| ||||| ||| | ||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
51302306 |
gagatacaatatagtgtttcccgtgagacccactcctattcgaatgcaattgttttatagcacctagaagttatagagatgattcccacccggtgtattt |
51302207 |
T |
|
| Q |
421 |
ttcccacactctctggatttactcaacactctatttttcttctcacacacttctacacacacagaagctttgtattctcacttctgctt |
509 |
Q |
| |
|
| ||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
51302206 |
tatccacactctctggatttactcaatactctatttttcctcacacacacttctacacacacagaagctttgtattttcacttatgctt |
51302118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 6e-29
Query Start/End: Original strand, 100 - 182
Target Start/End: Complemental strand, 51303019 - 51302937
Alignment:
| Q |
100 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagc |
182 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
51303019 |
tgttgggatcgacgagcttaatgcaagtgtaaattaaaatttcaaaatccaaaacagattggatcttgcagcgcagcggtagc |
51302937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-18
Query Start/End: Original strand, 744 - 816
Target Start/End: Complemental strand, 51298598 - 51298526
Alignment:
| Q |
744 |
ggtagaagactatttacaattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggcca |
816 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||| |||||| ||||||||| |||||||||||||||||| |
|
|
| T |
51298598 |
ggtagaaaactatttgcaattacttgtagtaattgtttttggccagaaacaatagccacacgtggtggggcca |
51298526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000005
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 51302344 - 51302308
Alignment:
| Q |
191 |
tgaacaccaatatttaacgtggaaaaccctctaatac |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51302344 |
tgaacaccaatatttaacgtggaaaaccctctaatac |
51302308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000008
Query Start/End: Original strand, 985 - 1102
Target Start/End: Original strand, 54968395 - 54968513
Alignment:
| Q |
985 |
agatacctcaagatccacttcacagcttcccaatgttcttttcccggatt-gaaagaaacctgctaacaactccaactgcacgagcaatatctggcctgg |
1083 |
Q |
| |
|
||||||||||| ||||| |||||||| | |||||| |||||||| ||||| || || || || || |||||||| || ||| |||||| ||||| || | |
|
|
| T |
54968395 |
agatacctcaatatccatttcacagcattccaatgctcttttcctggattcgacaggaatctactcacaactcctaccgcataagcaatgtctggtcttg |
54968494 |
T |
|
| Q |
1084 |
tgcaaaccattgcatacat |
1102 |
Q |
| |
|
||||||||||||| ||||| |
|
|
| T |
54968495 |
tgcaaaccattgcgtacat |
54968513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 1642 - 1678
Target Start/End: Complemental strand, 50060116 - 50060080
Alignment:
| Q |
1642 |
ccatgtagatctcttcatctaaatctccatgaagaaa |
1678 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |
|
|
| T |
50060116 |
ccatgtagatctcttcctctaaatctccatgaagaaa |
50060080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 130; Significance: 2e-66; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 130; E-Value: 2e-66
Query Start/End: Original strand, 671 - 816
Target Start/End: Complemental strand, 2308905 - 2308760
Alignment:
| Q |
671 |
tagccatgtctctccaccgtaagctatatcatagctttcctatttgtagaaaaatgcatccttgcattaaataggtagaagactatttacaattacttgt |
770 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2308905 |
tagccatgtctctccaccgtaagctataccatagttttcctatttatagaaaaatacatccttgcattaaataggtagaagactatttacaattacttgt |
2308806 |
T |
|
| Q |
771 |
agtaattgtctttggctggaaacaatacccacacgtggtggggcca |
816 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2308805 |
agtaattgtctttggctggaaacaatacccacacgtggtggggcca |
2308760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 4e-33
Query Start/End: Original strand, 100 - 282
Target Start/End: Original strand, 2100199 - 2100379
Alignment:
| Q |
100 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattgga-tcttgcagcgcagcggtagcnnnnnnnntgaacacc |
198 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||| || | ||||||| || || || |||||| | |
|
|
| T |
2100199 |
tgttgggctcgacgagcttaacacaagtgtaaattaaaattccaaaattcataagagatttgaattttgcagcacaacgataatgataaaattgaacatc |
2100298 |
T |
|
| Q |
199 |
aatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaata |
282 |
Q |
| |
|
||||||||| |||||||||||| ||||| |||| ||||||| ||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2100299 |
aatatttaaggtggaaaaccctttaataatgagcgaaaaac---ggggcaaactccgaaaaatattccactatattaaagaata |
2100379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 1e-20
Query Start/End: Original strand, 985 - 1120
Target Start/End: Original strand, 796020 - 796156
Alignment:
| Q |
985 |
agatacctcaagatccacttcacagcttcccaatgttcttttcccggatt-gaaagaaacctgctaacaactccaactgcacgagcaatatctggcctgg |
1083 |
Q |
| |
|
||||||||||| ||||| || || ||||||||||| |||| || ||||| || | |||||||||||||||||| |||||| | |||| |||||||| | |
|
|
| T |
796020 |
agatacctcaaaatccatttaaccgcttcccaatgagctttacctggatttgacataaacctgctaacaactcccactgcatggccaatgtctggccttg |
796119 |
T |
|
| Q |
1084 |
tgcaaaccattgcatacatcaaactcccaactgctga |
1120 |
Q |
| |
|
| ||||||||||||||||||||||| |||| |||||| |
|
|
| T |
796120 |
tacaaaccattgcatacatcaaacttccaattgctga |
796156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 53; E-Value: 1e-20
Query Start/End: Original strand, 985 - 1120
Target Start/End: Complemental strand, 8273768 - 8273632
Alignment:
| Q |
985 |
agatacctcaagatccacttcacagcttcccaatgttcttttcccggatt-gaaagaaacctgctaacaactccaactgcacgagcaatatctggcctgg |
1083 |
Q |
| |
|
||||||||||| ||||| || || ||||||||||| |||| || ||||| || | |||||||||||||||||| |||||| | |||| |||||||| | |
|
|
| T |
8273768 |
agatacctcaaaatccatttaaccgcttcccaatgagctttacctggatttgacataaacctgctaacaactcccactgcatggccaatgtctggccttg |
8273669 |
T |
|
| Q |
1084 |
tgcaaaccattgcatacatcaaactcccaactgctga |
1120 |
Q |
| |
|
| ||||||||||||||||||||||| |||| |||||| |
|
|
| T |
8273668 |
tacaaaccattgcatacatcaaacttccaattgctga |
8273632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000005
Query Start/End: Original strand, 1533 - 1588
Target Start/End: Original strand, 796566 - 796621
Alignment:
| Q |
1533 |
tcaaatttcttataccattgtctaggtgcttgttttaatccatacaagctcttctt |
1588 |
Q |
| |
|
||||| ||| ||||||||||||| || |||||||||| ||||||||||||||||| |
|
|
| T |
796566 |
tcaaacttcatataccattgtcttggagcttgttttaggccatacaagctcttctt |
796621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000005
Query Start/End: Original strand, 1533 - 1588
Target Start/End: Complemental strand, 8273261 - 8273206
Alignment:
| Q |
1533 |
tcaaatttcttataccattgtctaggtgcttgttttaatccatacaagctcttctt |
1588 |
Q |
| |
|
||||| ||| ||||||||||||| || |||||||||| ||||||||||||||||| |
|
|
| T |
8273261 |
tcaaacttcatataccattgtcttggagcttgttttaggccatacaagctcttctt |
8273206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 305
Target Start/End: Original strand, 2100723 - 2100753
Alignment:
| Q |
275 |
aaagaatattacaatattctctccactctct |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
2100723 |
aaagaatattacaatattctctccactctct |
2100753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 31; Significance: 0.0000002; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 985 - 1102
Target Start/End: Complemental strand, 1752 - 1634
Alignment:
| Q |
985 |
agatacctcaagatccacttcacagcttcccaatgttcttttcccggatt-gaaagaaacctgctaacaactccaactgcacgagcaatatctggcctgg |
1083 |
Q |
| |
|
||||||||||| ||||| |||||| | | |||||| |||||||| ||||| || || || || || |||||||| || ||| |||||| ||||| || | |
|
|
| T |
1752 |
agatacctcaatatccatttcacatcattccaatgctcttttcctggattcgacaggaatctactcacaactcctaccgcataagcaatgtctggtcttg |
1653 |
T |
|
| Q |
1084 |
tgcaaaccattgcatacat |
1102 |
Q |
| |
|
||||||||||||| ||||| |
|
|
| T |
1652 |
tgcaaaccattgcgtacat |
1634 |
T |
|
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