View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0489_low_2 (Length: 395)
Name: NF0489_low_2
Description: NF0489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0489_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 1e-91; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 168 - 354
Target Start/End: Complemental strand, 22054920 - 22054734
Alignment:
| Q |
168 |
taagagaaatgagagagttcagaacgttcagatctatgttaagaatagagaggatgaagagagttttgtttatggtgaattgtattgcatagtatttatg |
267 |
Q |
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| T |
22054920 |
taagagaaatgagagagttcagaacgttcagatctgtgttaagaatagagaggatgaagagagttttgtttatggtgaattgtattgcatagtggttatg |
22054821 |
T |
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| Q |
268 |
atacaagatatttatgtgtgatatgaattctatcaaatgaatacaaaacaaagtacttattagactaagttgagttatttgctctac |
354 |
Q |
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| T |
22054820 |
atacaagatattaatgtgtgatatgaattctatcaaatgaatacaaaacaaagtacttattagactaagttgagttatttgctctac |
22054734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 149 - 251
Target Start/End: Original strand, 29298389 - 29298491
Alignment:
| Q |
149 |
tgatgcttacactcaatgataagagaaatgagagagttcagaacgttcagatctatgttaagaatagagaggatgaagagagttttgtttatggtgaatt |
248 |
Q |
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|||||||||||||||||||| ||||||| |||| |||||| ||||||| | |||||| ||||| ||||||||||||||| ||||||| || ||||||| |
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| T |
29298389 |
tgatgcttacactcaatgatgagagaaaggagaaagttcaaaacgttctattttatgttgagaattgagaggatgaagagatttttgttgatagtgaatt |
29298488 |
T |
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| Q |
249 |
gta |
251 |
Q |
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||| |
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| T |
29298489 |
gta |
29298491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 354
Target Start/End: Original strand, 29298518 - 29298609
Alignment:
| Q |
263 |
ttatgatacaagatatt--tatgtgtgatatgaattctatcaaatgaatacaaaacaaagtacttattagactaagttgagttatttgctctac |
354 |
Q |
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| T |
29298518 |
ttatgatacaatatattgatatgtaatatatgagttatatcaattgaatacaaaac-aagtactta-taggctaagttgagttacttgctctac |
29298609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 155 - 246
Target Start/End: Complemental strand, 33829810 - 33829720
Alignment:
| Q |
155 |
ttacactcaatgataagagaaatgagagagttcagaacgttcagatctatgttaagaatagagaggatgaagagagttttgtttatggtgaa |
246 |
Q |
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| T |
33829810 |
ttacacacactgataagagaaat-agagagttcaaaacgttctgaactgtaatgagaatagagaggatgaagagagttttgtttatggtgaa |
33829720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 154 - 251
Target Start/End: Complemental strand, 930117 - 930021
Alignment:
| Q |
154 |
cttacactcaatgataagagaaatgagagagttcagaacgttcagatctatgtta--agaatagagaggatgaagagagttttgtttatggtgaattgta |
251 |
Q |
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|||||||||| |||| ||||||| ||||| ||||||||||||| || ||||||| |||||||||| |||||||||||||||||||||||||||||||| |
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| T |
930117 |
cttacactcactgatgagagaaa-gagagcgttcagaacgttct-at-tatgttatgagaatagagaagatgaagagagttttgtttatggtgaattgta |
930021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 225 - 260
Target Start/End: Original strand, 6600631 - 6600666
Alignment:
| Q |
225 |
agagagttttgtttatggtgaattgtattgcatagt |
260 |
Q |
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| T |
6600631 |
agagagttttgtttatggtgaattgtattgcatagt |
6600666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 195
Target Start/End: Original strand, 6600563 - 6600609
Alignment:
| Q |
149 |
tgatgcttacactcaatgataagagaaatgagagagttcagaacgtt |
195 |
Q |
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| T |
6600563 |
tgatgcttacactcaatgatgagagaaaatagagagttcagaacgtt |
6600609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 152 - 251
Target Start/End: Complemental strand, 4659862 - 4659763
Alignment:
| Q |
152 |
tgcttacactcaatgataagagaaatgagagagttcagaacgttcagatctatgttaagaatagagaggatgaagagagttttgtttatggtgaattgta |
251 |
Q |
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|||||||||||| |||| ||||||| |||| ||||| || |||| | | | || | |||||| ||||||||| ||||||||||||||||||||||||| |
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| T |
4659862 |
tgcttacactcactgatgagagaaaagagatagttccaaatgttctgttatgtgatgagaataatgaggatgaatagagttttgtttatggtgaattgta |
4659763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 149 - 248
Target Start/End: Complemental strand, 3730990 - 3730894
Alignment:
| Q |
149 |
tgatgcttacactcaatgataagagaaatgagagagttcagaacgttcagatctatgttaagaatagagaggatgaagagagttttgtttatggtgaatt |
248 |
Q |
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||||||||||| |||||||| ||||||| |||||| || ||||||||| | | | || ||| ||||||||||||||||||||||||||||||||| |
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| T |
3730990 |
tgatgcttacattcaatgatgagagaaaagagagaatttagaacgttctgttttgtg---agatcgaagaggatgaagagagttttgtttatggtgaatt |
3730894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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