View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0489_low_3 (Length: 329)
Name: NF0489_low_3
Description: NF0489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0489_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 16 - 300
Target Start/End: Complemental strand, 46146199 - 46145915
Alignment:
| Q |
16 |
gatgaatattttttcttattaaggtacttgcaccatgaggcaaatcctcacataattcatagagacataaaggcaagcaatgttctattagacacagaat |
115 |
Q |
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| T |
46146199 |
gatgaatattttttcttattaaggtacttgcaccatgaggcaaatcctcacataattcatagagacataaaggcaagcaatgttctattagacacagaat |
46146100 |
T |
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| Q |
116 |
ttcaagccaaggtagctgattttggttttgcaaagctaataccagcaggtgtaagccatcttacaacaagggttaaaggcacacttggttatttggcacc |
215 |
Q |
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| T |
46146099 |
ttcaagccaaggtagctgattttggttttgcaaagctaataccagcaggtgtaagccatcttacaacaagggttaaaggcacacttggttatttggcacc |
46146000 |
T |
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| Q |
216 |
agaatatgctatgtggggtaaggtttctgagagttgtgatgtttatagctttggaattttgcttttggagattataagtgccaag |
300 |
Q |
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| T |
46145999 |
agaatatgctatgtggggtaaggtttctgagagttgtgatgtttatagctttggaattttgcttttggagattataagtgccaag |
46145915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 130 - 273
Target Start/End: Complemental strand, 53682330 - 53682187
Alignment:
| Q |
130 |
gctgattttggttttgcaaagctaataccagcaggtgtaagccatcttacaacaagggttaaaggcacacttggttatttggcaccagaatatgctatgt |
229 |
Q |
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| T |
53682330 |
gctgattttggttttgcaaagctaataccagaaggagttagtcacatgacaaccagggttaagggtaccttaggatacttagcacctgagtatgctatgt |
53682231 |
T |
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| Q |
230 |
ggggtaaggtttctgagagttgtgatgtttatagctttggaatt |
273 |
Q |
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| T |
53682230 |
ggggaaaagtttctgaaagctgtgatgtctatagttttggaatt |
53682187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 99
Target Start/End: Complemental strand, 53682423 - 53682361
Alignment:
| Q |
37 |
aggtacttgcaccatgaggcaaatcctcacataattcatagagacataaaggcaagcaatgtt |
99 |
Q |
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| T |
53682423 |
aggtacttgcaccatgaggtcacaccccacatcattcatagagacatcaaggcaagtaatgtt |
53682361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 273
Target Start/End: Original strand, 44772089 - 44772175
Alignment:
| Q |
187 |
gttaaaggcacacttggttatttggcaccagaatatgctatgtggggtaaggtttctgagagttgtgatgtttatagctttggaatt |
273 |
Q |
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| T |
44772089 |
gttaagggcacccttggctatcttgcaccagaatatgctatgttaggtaaagctaatgagagttgtgatgtctacagttttggaatt |
44772175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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