View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0489_low_6 (Length: 254)
Name: NF0489_low_6
Description: NF0489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0489_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 35 - 239
Target Start/End: Complemental strand, 48107897 - 48107698
Alignment:
| Q |
35 |
tgacacatcttttaatatgattattaattcttaaacattatattgcataaactttcttgtgttgtcaatgccttgaaataaaacagtgtatgaaagaacc |
134 |
Q |
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| T |
48107897 |
tgacacatcttttaatatgattattaattcttaaacatt-----gcataaattttcttgtgttgtcaatgccttggaataaaacagtgtatgaaagaacc |
48107803 |
T |
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| Q |
135 |
tcaaagagcacaatatggagggggaattataataaattccggatttgatcacaacatagagggttggacagtatttggaaatggaacaattgaggaacgt |
234 |
Q |
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| T |
48107802 |
tcaaagagcacaatatggagggggaattatagtaaattccggatttgatcacaacatagagggttggacagtatttggaaatggaacaattgaggaacgt |
48107703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 102 - 239
Target Start/End: Complemental strand, 48064166 - 48064029
Alignment:
| Q |
102 |
atgccttgaaataaaacagtgtatgaaagaacctcaaagagcacaatatggagggggaattataataaattccggatttgatcacaacatagagggttgg |
201 |
Q |
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| T |
48064166 |
atgccttgaaataaagcagtgtgtgacagaacctaagagggcacaatatggaggaggcattatagtaaatccaggatttgatcacaacataaagggttgg |
48064067 |
T |
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| Q |
202 |
acagtatttggaaatggaacaattgaggaacgtatatc |
239 |
Q |
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| T |
48064066 |
agagtgtttggaaatggaacaatcgaggaacgaatatc |
48064029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 76 - 233
Target Start/End: Complemental strand, 48101445 - 48101288
Alignment:
| Q |
76 |
attgcataaactttcttgtgttgtcaatgccttgaaataaaacagtgtatgaaagaacctcaaagagcacaatatggagggggaattataataaattccg |
175 |
Q |
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| T |
48101445 |
attgcacaaacttacttgtgttgccaatgcctataaacaaagcagtgtgtgacagaacctaagagggcacaatatgggggaggcattacagtaaatccag |
48101346 |
T |
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| Q |
176 |
gatttgatcacaacatagagggttggacagtatttggaaatggaacaattgaggaacg |
233 |
Q |
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||||||||||||||||| | || |||| ||| ||||||||||||||||| |||||||| |
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| T |
48101345 |
gatttgatcacaacataaatggctggaaagtgtttggaaatggaacaatcgaggaacg |
48101288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 106 - 233
Target Start/End: Complemental strand, 48068818 - 48068691
Alignment:
| Q |
106 |
cttgaaataaaacagtgtatgaaagaacctcaaagagcacaatatggagggggaattataataaattccggatttgatcacaacatagagggttggacag |
205 |
Q |
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||||||||||| |||||| | ||||||||| ||||||||||||||||| || |||||| ||||| | ||||||||||||||||| ||| |||||| | |
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| T |
48068818 |
cttgaaataaaccagtgtgtcccagaacctcagagagcacaatatggaggtggcattatagtaaatccaggatttgatcacaacattaaggattggacgg |
48068719 |
T |
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| Q |
206 |
tatttggaaatggaacaattgaggaacg |
233 |
Q |
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| T |
48068718 |
tgtttgagcatggaacaatcaaggaacg |
48068691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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