View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0493-Insertion-10 (Length: 482)
Name: NF0493-Insertion-10
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493-Insertion-10 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-103; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 264 - 480
Target Start/End: Original strand, 11330045 - 11330258
Alignment:
| Q |
264 |
tcactatctttctccaactcccttttcttctcactgtccctatccttcttatctctatccctatgtttctctctatcataatctttcccccttgaattac |
363 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
11330045 |
tcactatctttctccaactcccttttcttctcactgtccctatccttcttatctctatccctatgtttctctctatcataatctttctcccttgaattac |
11330144 |
T |
|
| Q |
364 |
cataattaaacctatttttctctcgctcaaccctattacgttgttctcttctggaacctctatccttttctgtatccccagaagccctcttgggatgatc |
463 |
Q |
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||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
11330145 |
cataattaaacctatttttctctcgctcaaccctactac---gttctcttctggaacctctatccttttttgtatccccagaagccctcttgggatgatc |
11330241 |
T |
|
| Q |
464 |
cctgtctcttcttcgat |
480 |
Q |
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||||||||||||||||| |
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| T |
11330242 |
cctgtctcttcttcgat |
11330258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 264 - 480
Target Start/End: Original strand, 11488066 - 11488279
Alignment:
| Q |
264 |
tcactatctttctccaactcccttttcttctcactgtccctatccttcttatctctatccctatgtttctctctatcataatctttcccccttgaattac |
363 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
11488066 |
tcactatctttctccaactcccttttcttctcactgtccctatccttcttatctctatccctatgtttctctctatcataatctttctcccttgaattac |
11488165 |
T |
|
| Q |
364 |
cataattaaacctatttttctctcgctcaaccctattacgttgttctcttctggaacctctatccttttctgtatccccagaagccctcttgggatgatc |
463 |
Q |
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| T |
11488166 |
cataattaaacctatttttctctcgctcaaccctactac---gttctcttctggaacctctatccttttttgtatccccagaagccctcttgggatgatc |
11488262 |
T |
|
| Q |
464 |
cctgtctcttcttcgat |
480 |
Q |
| |
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||||||||||||||||| |
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| T |
11488263 |
cctgtctcttcttcgat |
11488279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 7 - 197
Target Start/End: Original strand, 11329788 - 11329978
Alignment:
| Q |
7 |
agtatgctgatgtttcaccatcttcatcatcttgattgggttttgaagccttagcatgcttgccaacatcagcatctctcttttcatggtagtttaattt |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
11329788 |
agtatgctgatgtttcaccatcttcatcatcttgattgagtattgaagccttagcatgcttgccaacatcatcatctctcttttcatggtagtttaattt |
11329887 |
T |
|
| Q |
107 |
atcatcaagattagacaattcaaaatcttcctcacgagcctttcgttttcctctatccattgacctatccttctcatgctcatccctatta |
197 |
Q |
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| T |
11329888 |
atcatcaagattagacaattcaaaatcttcctcacgagcctttcgttttcctctatccattgacctatccttctcatgctcatccctatta |
11329978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 7 - 197
Target Start/End: Original strand, 11487809 - 11487999
Alignment:
| Q |
7 |
agtatgctgatgtttcaccatcttcatcatcttgattgggttttgaagccttagcatgcttgccaacatcagcatctctcttttcatggtagtttaattt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
11487809 |
agtatgctgatgtttcaccatcttcatcatcttgattgagtattgaagccttagcatgcttgccaacatcatcatctctcttttcatggtagtttaattt |
11487908 |
T |
|
| Q |
107 |
atcatcaagattagacaattcaaaatcttcctcacgagcctttcgttttcctctatccattgacctatccttctcatgctcatccctatta |
197 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11487909 |
atcatcaagattagacaattcaaaatcttcctcacgagcctttcgttttcctctatccattgacctatccttctcatgctcatccctatta |
11487999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 27 - 181
Target Start/End: Original strand, 37380834 - 37380988
Alignment:
| Q |
27 |
tcttcatcatcttgattgggttttgaagccttagcatgcttgccaacatcagcatctctcttttcatggtagtttaatttatcatcaagattagacaatt |
126 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||| ||||||| |||||||| ||||||||||||||||||| | || | |||||||||||||| ||| |
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| T |
37380834 |
tctttatcatcttgattgagttttgaagccttttcatgcttaccaacatcctcatctctcttttcatggtaatctactctatcatcaagattacctgatt |
37380933 |
T |
|
| Q |
127 |
caaaatcttcctcacgagcctttcgttttcctctatccattgacctatccttctc |
181 |
Q |
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|| |||||||||| ||||||| | ||||||||||| | |||||||| ||||| |
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| T |
37380934 |
cataatcttcctcgtgagccttcctacttcctctatccctcgacctatctttctc |
37380988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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