View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0493-Insertion-11 (Length: 410)
Name: NF0493-Insertion-11
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493-Insertion-11 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 10 - 410
Target Start/End: Original strand, 11553200 - 11553600
Alignment:
| Q |
10 |
gtcgtctccaaagtgatagaagtctatgcctattcgaacctacagttcaagctaagtatacattgataaaccatcaaaatgaaggtctgaattgatgaga |
109 |
Q |
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| T |
11553200 |
gtcgtctccaaagtaatggaagttgatgcctattcgaacctacagttcaaactaaatatacattgataaaccatcaaaatgaaggtctgaattgatgaga |
11553299 |
T |
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| Q |
110 |
ttatatttacatgattatgaatttatgatatatacagatccactacattagcataatatactcctaaagaactattgatgtacttgaggcaatttcctaa |
209 |
Q |
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| T |
11553300 |
ttatatttacatgattatgaatttatgatatatacagatgcactacattagcataatatactcctaaagaactattgatgtacttgaggcaatttcctaa |
11553399 |
T |
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| Q |
210 |
agaaaatgtcaagctagtgcaagtgtagcacaatgatcatgattaattacatgatataattcctaaccactaaacaagtacaacatatagagccacctca |
309 |
Q |
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| T |
11553400 |
agaaattgtcaagctagtgcaagtgtagcacaatgatcatgattaattacatgatataattcctaaccactaaacaagtacaacatatagagccacctca |
11553499 |
T |
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| Q |
310 |
taagtaaaagtagaagacgatattcaaagcaaaattctcttctgtttaggaactaggccagccatttggtgaatgctctttagagtggtagtttcgcttt |
409 |
Q |
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| T |
11553500 |
taagtaaaagtagaagaagatattcaaagcaaaattctcttctgtttaggaactaggccagccatttggtgaatgctctttagagtggtagtttcgcttt |
11553599 |
T |
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| Q |
410 |
g |
410 |
Q |
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| T |
11553600 |
g |
11553600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 46 - 268
Target Start/End: Original strand, 11548973 - 11549195
Alignment:
| Q |
46 |
aacctacagttcaagctaagtatacattgataaaccatcaaaatgaaggtctgaattgatgagattatatttacatgattatgaatttatgatatataca |
145 |
Q |
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| T |
11548973 |
aacctacagttcaaactaagtatacactgataaaccaccaaaactaagatctggattgatgagtttatatttacatgattatggatttgtgatatatact |
11549072 |
T |
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| Q |
146 |
gatccactacattagcataatatactcctaaagaactattgatgtacttgaggcaatttcctaaagaaaatgtcaagctagtgcaagtgtagcacaatga |
245 |
Q |
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| T |
11549073 |
gacccactacattagcagaatatactcctaaagcactatggatggatttgaggcaatttcctaaagaaattgtcaatctagtgcaagtgtagcacaatct |
11549172 |
T |
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| Q |
246 |
tcatgattaattacatgatataa |
268 |
Q |
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| T |
11549173 |
tcatgattaaatacatgatataa |
11549195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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