View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0493-Insertion-12 (Length: 400)
Name: NF0493-Insertion-12
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493-Insertion-12 |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 12 - 399
Target Start/End: Complemental strand, 42082339 - 42081949
Alignment:
| Q |
12 |
ttgtctacgatttgtaacctatgttttgttacaacatccatttttgtaaagtgagcaacttgtgatttggggctatttaccgatcaaatacatattagac |
111 |
Q |
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|||||||| ||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
42082339 |
ttgtctacaatttgtaacctatctttttttacaacatccatttttgtaaagtgaacaacttgtgatttggggccatttaccgatcaaatacatattagac |
42082240 |
T |
|
| Q |
112 |
cnnnnnnn--ccttccactctatattgatttctcgtgtgtctttcggattgcaagcaaaaactacttttctcgaatttcgtcgctctaagtctcgcacta |
209 |
Q |
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| T |
42082239 |
ctttttttttccttccactctatattgatttctcgtgcgtctttcggattgcaagaaaaaactacttttcttgaatttcgtcgctctaagcctcgcacta |
42082140 |
T |
|
| Q |
210 |
-tccatcattatccgttataatgtgtaacaacacataacatatgatctgctacgaatcgctcaacaaagtaacagtaacgatcgtaacttccaaattgaa |
308 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
42082139 |
atccatcattatccgttataatgtgtaacaacgcataacatatgatctgttacgaatcgctcaacaaagtaacagtaacgatcgtgacttccaaattgaa |
42082040 |
T |
|
| Q |
309 |
aatcgaaaagataaattgatcttcaggtaagtttaaattcgaaaagatatattcaaagcaaatcaatcttaaacatttccaccattgcgat |
399 |
Q |
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|||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
42082039 |
aatcgaaaagataaattgttcttcatgtaagtttaaattcgaaaagatatattaaaagcaaatcaatcttaaacagttccaccattgcgat |
42081949 |
T |
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