View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0493-Insertion-13 (Length: 366)
Name: NF0493-Insertion-13
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493-Insertion-13 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 62 - 364
Target Start/End: Complemental strand, 46582010 - 46581692
Alignment:
| Q |
62 |
cttcaaaaaatccacgtgatataaaaatcgaggctaatgttagcttataaaacagttattctcctcaaccatacttcaaccaaagacaacactatgtgcc |
161 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46582010 |
cttcaaaaaatccacgtgatataaaaatcgaggctaatgttagcttataaaacagctattctcctcaaccatacttcaaccaaagacaacactatgtgcc |
46581911 |
T |
|
| Q |
162 |
tctttggttgggcttctgcaagctataaacgcacgtttttacctttcaacgtgatttctgcattttacaacatgtttggttattttttcttaaattaatt |
261 |
Q |
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| T |
46581910 |
tgtttggttgggcttctgcaagctataaacgcacgtttttaccttccaacgtgatttctgcattttacaacatgtttggttattttttcttaaatcaatt |
46581811 |
T |
|
| Q |
262 |
aaggctttcaaaaacaattttaggagaag----------------cttcaaatcaattccacgtttactgttggttggcaattagaaaacaatttttctt |
345 |
Q |
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||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
46581810 |
aaggctttcaaaagcaattttaggagaagctccaaatcctagcttctccaaatcaattccacgtttactgttggttggcaattagaaaacattttttctt |
46581711 |
T |
|
| Q |
346 |
ccttatttccgcccacctc |
364 |
Q |
| |
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|||||||| |||||||||| |
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| T |
46581710 |
ccttatttgcgcccacctc |
46581692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 46583746 - 46583685
Alignment:
| Q |
7 |
actatttattttcaaattcacagctgttatttttagtattgaatttatttctgaacttcaaa |
68 |
Q |
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| T |
46583746 |
actatttattttcaaatacacagctgttatttttagtattgaatttatttccgaacttcaaa |
46583685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 164 - 353
Target Start/End: Complemental strand, 26275370 - 26275164
Alignment:
| Q |
164 |
tttggttgggcttctgcaagctataaacgcacgtttttacctttcaa-cgtgatttctgcattttacaacatgtttggttattttttcttaaattaatta |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||| ||||||||||||||||||| | | ||||| |
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| T |
26275370 |
tttggttgggcttctgcaagctataaacgcacgtatttaccttccaaacgtgatttctgcattttacaatatgtttggttattttttctccagtcaatta |
26275271 |
T |
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| Q |
263 |
aggctttcaaaaacaattttaggagaag----------------cttcaaatcaattccacgtttactgttggttggcaattagaaaacaatttttcttc |
346 |
Q |
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|||||| ||||| ||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
26275270 |
aggcttccaaaagcaattttaggagaagctccaaatcctaacttctccaaatcaattccacgtttaccgttggttggcaattagaaaacaatttttcttc |
26275171 |
T |
|
| Q |
347 |
cttattt |
353 |
Q |
| |
|
||||||| |
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|
| T |
26275170 |
cttattt |
26275164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 209 - 299
Target Start/End: Complemental strand, 30895439 - 30895349
Alignment:
| Q |
209 |
aacgtgatttctgcattttacaacatgtttggttattttttcttaaattaattaaggctttcaaaaacaattttaggagaagcttcaaatc |
299 |
Q |
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||||||||||||||||||| |||||||||||| ||| ||| || |||| |||| || ||| ||||| |||||||| |||||||| |||||| |
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| T |
30895439 |
aacgtgatttctgcattttgcaacatgtttggctatatttgctcaaatcaattgagccttccaaaagcaattttaagagaagctccaaatc |
30895349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 292
Target Start/End: Complemental strand, 32828161 - 32828080
Alignment:
| Q |
211 |
cgtgatttctgcattttacaacatgtttggttattttttcttaaattaattaaggctttcaaaaacaattttaggagaagct |
292 |
Q |
| |
|
||||||||| || |||| |||||||||||||||| ||||| |||| |||| || ||| |||| ||||| ||||||||||| |
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| T |
32828161 |
cgtgatttcagccttttgcaacatgtttggttataatttctcaaatcaattcagtcttctaaaagcaattctaggagaagct |
32828080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 209 - 299
Target Start/End: Complemental strand, 14653743 - 14653653
Alignment:
| Q |
209 |
aacgtgatttctgcattttacaacatgtttggttattttttcttaaattaattaaggctttcaaaaacaattttaggagaagcttcaaatc |
299 |
Q |
| |
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|||||||||| |||||||| |||||||||||| | | |||||| |||| |||| |||||| ||||| ||||| ||||||||||| |||||| |
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| T |
14653743 |
aacgtgatttttgcattttgcaacatgtttggctgtattttctgaaatcaattcaggcttccaaaagcaattctaggagaagctccaaatc |
14653653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 366
Target Start/End: Complemental strand, 14653642 - 14653569
Alignment:
| Q |
294 |
caaatcaattccacgtttactgttggttggcaatt-agaaaacaatttttcttccttatttccgcccacctcca |
366 |
Q |
| |
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||||||||||| |||||||||||||||||||| || | ||||| || ||||||||||||| | | |||||||| |
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| T |
14653642 |
caaatcaattctacgtttactgttggttggcagttaaaaaaacttttcttcttccttatttgccctcacctcca |
14653569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 209 - 299
Target Start/End: Complemental strand, 40792908 - 40792815
Alignment:
| Q |
209 |
aacgtgatttctgcattttacaacatgtttggtt---attttttcttaaattaattaaggctttcaaaaacaattttaggagaagcttcaaatc |
299 |
Q |
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||||||||||||||||||||||||||||||| | || |||||| |||| |||| || ||| ||||||||||| ||||||||||| |||||| |
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| T |
40792908 |
aacgtgatttctgcattttacaacatgtttgactacaatattttctaaaatcaattcagccttccaaaaacaattataggagaagctccaaatc |
40792815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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