View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0493-Insertion-2 (Length: 747)

Name: NF0493-Insertion-2
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0493-Insertion-2
NF0493-Insertion-2
[»] chr7 (7 HSPs)
chr7 (8-227)||(360827-361046)
chr7 (233-463)||(360554-360788)
chr7 (436-567)||(360483-360614)
chr7 (643-747)||(360192-360294)
chr7 (643-697)||(360296-360350)
chr7 (644-697)||(360352-360405)
chr7 (695-746)||(18308354-18308405)
[»] chr8 (4 HSPs)
chr8 (643-747)||(25556683-25556787)
chr8 (647-697)||(25556631-25556681)
chr8 (651-697)||(25556578-25556624)
chr8 (705-747)||(3301724-3301766)
[»] chr4 (6 HSPs)
chr4 (643-747)||(723789-723893)
chr4 (647-697)||(723526-723576)
chr4 (643-697)||(723621-723675)
chr4 (643-697)||(723677-723731)
chr4 (643-697)||(723733-723787)
chr4 (378-438)||(23880132-23880192)
[»] chr6 (2 HSPs)
chr6 (687-747)||(11233815-11233874)
chr6 (705-747)||(8671410-8671452)
[»] chr5 (2 HSPs)
chr5 (687-747)||(40934832-40934891)
chr5 (705-747)||(38838703-38838745)
[»] chr3 (2 HSPs)
chr3 (378-435)||(14065737-14065794)
chr3 (687-747)||(18558810-18558869)
[»] chr1 (2 HSPs)
chr1 (687-747)||(24279176-24279235)
chr1 (709-746)||(30508424-30508461)
[»] scaffold0023 (1 HSPs)
scaffold0023 (705-747)||(148403-148445)
[»] scaffold0037 (1 HSPs)
scaffold0037 (388-438)||(19340-19390)


Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 8 - 227
Target Start/End: Complemental strand, 361046 - 360827
Alignment:
Q  8 ctttataatttgttttcctcaatgatgccttgcttgcctaagcgtccagtacaacctatttatttttatgctattgggttttcaatgatgactttgttca 107  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  361046 ctttataatttattttcctcaatgatgccttgcttgcctaagcgtccagtacaacctatttatttttatgctattgggttttcaatgatgactttgttca 360947  T
Q  108 tacgaatatattattaaagctgtttctaattactgatggctagtcttttgagaaatacatcaatggctatacttcatcattaaagcttatttctatatta 207  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  360946 tacgaatatattattaaagctgtttctaattattgatggctagtcttttgagaaatacatcaatggctatacttcatcattaaagcttatttctatatta 360847  T
Q  208 tcgttaactattcttttgtg 227  Q
    ||||||||||||||||||||    
T  360846 tcgttaactattcttttgtg 360827  T

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Target: chr7; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 233 - 463
Target Start/End: Complemental strand, 360788 - 360554
Alignment:
Q  233 ttctatgttgggaagtgcatacatcgcctcaaaatcaagaagctgaagaccaagacagatgaggcga----atatcagcgcgagcctcacaacaaagttt 328  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||    
T  360788 ttctatgttgggaagtgcatacatcgcctcaaaatcaggaagctgaagaccaagacagatgaggcgatcgaatatcagcgcgagcctcacaacaaagttt 360689  T
Q  329 gcaagttatagtgttgctcgttaacaaagtttgctacagggccattatgaagattctgaatgaggtagtgaaacactcttggaggtattagtcttgctct 428  Q
    ||||||||| |||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  360688 gcaagttatggtgttgctcgttaacaaagtttgctacaaggccgttctgaagattctgaatgaggtagtgaaacactcttggaggtattagtcttgctct 360589  T
Q  429 tgaataaactcttggaggtattagtcttgctcttg 463  Q
    |||||||||||||||||||||  ||||||||||||    
T  360588 tgaataaactcttggaggtatatgtcttgctcttg 360554  T

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Target: chr7; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 436 - 567
Target Start/End: Complemental strand, 360614 - 360483
Alignment:
Q  436 actcttggaggtattagtcttgctcttgaataaactcttggaggtatatgtcctgctttggctacaagacatactctctcgaagcaattctcccaccctg 535  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||    
T  360614 actcttggaggtattagtcttgctcttgaataaactcttggaggtatatgtcttgctcttgctacaagacatactctctcgaagcaattctcccaccctg 360515  T
Q  536 aagcaattctctttcaaaggaatatcaggttc 567  Q
    ||| ||||||||||||||||||||||||||||    
T  360514 aagaaattctctttcaaaggaatatcaggttc 360483  T

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Target: chr7; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 643 - 747
Target Start/End: Complemental strand, 360294 - 360192
Alignment:
Q  643 cacttttagattggaagaaaattttatgatcaatatattttgaaaaaatatattttacaaccttaatttcgaagtctcttatcaattttgtttatcttgc 742  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||    
T  360294 cacttttagatttgaagaaaattttatgatcaatatattttgaaaaaatatattttacaaccttaatttcgaagtctc--atcaattttgtttattttgc 360197  T
Q  743 aatta 747  Q
    |||||    
T  360196 aatta 360192  T

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Target: chr7; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 643 - 697
Target Start/End: Complemental strand, 360350 - 360296
Alignment:
Q  643 cacttttagattggaagaaaattttatgatcaatatattttgaaaaaatatattt 697  Q
    |||||||||||| |||||||||||||||||||||||||||||| |||||||||||    
T  360350 cacttttagatttgaagaaaattttatgatcaatatattttgagaaaatatattt 360296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 644 - 697
Target Start/End: Complemental strand, 360405 - 360352
Alignment:
Q  644 acttttagattggaagaaaattttatgatcaatatattttgaaaaaatatattt 697  Q
    ||||||||||| |||||||||||||||||||||||||||||| | |||||||||    
T  360405 acttttagattagaagaaaattttatgatcaatatattttgagagaatatattt 360352  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 695 - 746
Target Start/End: Original strand, 18308354 - 18308405
Alignment:
Q  695 ttttacaaccttaatttcgaagtctcttatcaattttgtttatcttgcaatt 746  Q
    ||||||||| ||||||| |||| |||||||| ||||||||||| ||||||||    
T  18308354 ttttacaactttaattttgaaggctcttatcgattttgtttattttgcaatt 18308405  T

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Target: chr8 (Bit Score: 97; Significance: 3e-47; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 643 - 747
Target Start/End: Original strand, 25556683 - 25556787
Alignment:
Q  643 cacttttagattggaagaaaattttatgatcaatatattttgaaaaaatatattttacaaccttaatttcgaagtctcttatcaattttgtttatcttgc 742  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  25556683 cacttttagatttgaagaaaattttatgatcaatatattttgaaaaaatatattttacaaccttaatttcggagtctcttatcaattttgtttatcttgc 25556782  T
Q  743 aatta 747  Q
    |||||    
T  25556783 aatta 25556787  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 647 - 697
Target Start/End: Original strand, 25556631 - 25556681
Alignment:
Q  647 tttagattggaagaaaattttatgatcaatatattttgaaaaaatatattt 697  Q
    |||||||| |||||||||||||||||||||||||||||| |||||||||||    
T  25556631 tttagatttgaagaaaattttatgatcaatatattttgagaaaatatattt 25556681  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 651 - 697
Target Start/End: Original strand, 25556578 - 25556624
Alignment:
Q  651 gattggaagaaaattttatgatcaatatattttgaaaaaatatattt 697  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||    
T  25556578 gatttgaagaaaattttatgatcaatatattttgagaaaatatattt 25556624  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 705 - 747
Target Start/End: Original strand, 3301724 - 3301766
Alignment:
Q  705 ttaatttcgaagtctcttatcaattttgtttatcttgcaatta 747  Q
    ||||||||||||| ||||||| ||||||||||| |||||||||    
T  3301724 ttaatttcgaagtttcttatcgattttgtttatgttgcaatta 3301766  T

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Target: chr4 (Bit Score: 97; Significance: 3e-47; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 643 - 747
Target Start/End: Original strand, 723789 - 723893
Alignment:
Q  643 cacttttagattggaagaaaattttatgatcaatatattttgaaaaaatatattttacaaccttaatttcgaagtctcttatcaattttgtttatcttgc 742  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  723789 cacttttagatttgaagaaaattttatgatcaatatattttgaaaaaatatattttacaaccttaatttcgaagtctcttatcaattttgtttattttgc 723888  T
Q  743 aatta 747  Q
    |||||    
T  723889 aatta 723893  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 647 - 697
Target Start/End: Original strand, 723526 - 723576
Alignment:
Q  647 tttagattggaagaaaattttatgatcaatatattttgaaaaaatatattt 697  Q
    |||||||| |||||||||||||||||||||||||||||| | |||||||||    
T  723526 tttagatttgaagaaaattttatgatcaatatattttgagagaatatattt 723576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 643 - 697
Target Start/End: Original strand, 723621 - 723675
Alignment:
Q  643 cacttttagattggaagaaaattttatgatcaatatattttgaaaaaatatattt 697  Q
    ||||||||||||  |||||||||||||||||| |||||||||| |||||||||||    
T  723621 cacttttagatttaaagaaaattttatgatcagtatattttgagaaaatatattt 723675  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 643 - 697
Target Start/End: Original strand, 723677 - 723731
Alignment:
Q  643 cacttttagattggaagaaaattttatgatcaatatattttgaaaaaatatattt 697  Q
    |||||||||||| || ||||||||||||||||||||||||||| | |||||||||    
T  723677 cacttttagatttgaggaaaattttatgatcaatatattttgagagaatatattt 723731  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 643 - 697
Target Start/End: Original strand, 723733 - 723787
Alignment:
Q  643 cacttttagattggaagaaaattttatgatcaatatattttgaaaaaatatattt 697  Q
    ||||||||||||  |||||||||||||||||| |||||||||| |||||||||||    
T  723733 cacttttagatttaaagaaaattttatgatcagtatattttgataaaatatattt 723787  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 378 - 438
Target Start/End: Original strand, 23880132 - 23880192
Alignment:
Q  378 aagattctgaatgaggtagtgaaacactcttggaggtattagtcttgctcttgaataaact 438  Q
    |||||| | |||||| |||||| |||||||||||||||||| || ||||||||||||||||    
T  23880132 aagattttcaatgagatagtgatacactcttggaggtattaatcctgctcttgaataaact 23880192  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 687 - 747
Target Start/End: Original strand, 11233815 - 11233874
Alignment:
Q  687 aaaatatattttacaaccttaatttcgaagtctcttatcaattttgtttatcttgcaatta 747  Q
    |||||||||||| |||| ||||||||||||||||||||| ||||||||||| |||||||||    
T  11233815 aaaatatattttgcaac-ttaatttcgaagtctcttatcgattttgtttatgttgcaatta 11233874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 705 - 747
Target Start/End: Original strand, 8671410 - 8671452
Alignment:
Q  705 ttaatttcgaagtctcttatcaattttgtttatcttgcaatta 747  Q
    ||||||||||||||||||||| ||||||||||| |||||||||    
T  8671410 ttaatttcgaagtctcttatcgattttgtttatgttgcaatta 8671452  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 687 - 747
Target Start/End: Original strand, 40934832 - 40934891
Alignment:
Q  687 aaaatatattttacaaccttaatttcgaagtctcttatcaattttgtttatcttgcaatta 747  Q
    |||||||||||| |||| ||||||||||||||||||||| ||||||||||| |||||||||    
T  40934832 aaaatatattttgcaac-ttaatttcgaagtctcttatcgattttgtttatgttgcaatta 40934891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 705 - 747
Target Start/End: Original strand, 38838703 - 38838745
Alignment:
Q  705 ttaatttcgaagtctcttatcaattttgtttatcttgcaatta 747  Q
    ||||||||||||||||||||| ||||||||||| |||||||||    
T  38838703 ttaatttcgaagtctcttatcgattttgtttatgttgcaatta 38838745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 435
Target Start/End: Original strand, 14065737 - 14065794
Alignment:
Q  378 aagattctgaatgaggtagtgaaacactcttggaggtattagtcttgctcttgaataa 435  Q
    |||||| | |||||| ||||||||||||||||||||||||| || |||||||||||||    
T  14065737 aagattttcaatgagatagtgaaacactcttggaggtattaatcctgctcttgaataa 14065794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 687 - 747
Target Start/End: Original strand, 18558810 - 18558869
Alignment:
Q  687 aaaatatattttacaaccttaatttcgaagtctcttatcaattttgtttatcttgcaatta 747  Q
    |||| ||||||| |||| ||||||||||||||||||||| ||||||||||| |||||||||    
T  18558810 aaaaaatattttgcaac-ttaatttcgaagtctcttatcgattttgtttatgttgcaatta 18558869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 687 - 747
Target Start/End: Complemental strand, 24279235 - 24279176
Alignment:
Q  687 aaaatatattttacaaccttaatttcgaagtctcttatcaattttgtttatcttgcaatta 747  Q
    |||||||||||| |||| |||||||| |||||||||||| ||||||||||| |||||||||    
T  24279235 aaaatatattttgcaac-ttaatttcaaagtctcttatcgattttgtttatgttgcaatta 24279176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 709 - 746
Target Start/End: Original strand, 30508424 - 30508461
Alignment:
Q  709 tttcgaagtctcttatcaattttgtttatcttgcaatt 746  Q
    |||||||| |||||||||||||||||||| ||||||||    
T  30508424 tttcgaaggctcttatcaattttgtttattttgcaatt 30508461  T

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Target: scaffold0023 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 705 - 747
Target Start/End: Original strand, 148403 - 148445
Alignment:
Q  705 ttaatttcgaagtctcttatcaattttgtttatcttgcaatta 747  Q
    ||||||||||||||||||||| ||||||||||| |||||||||    
T  148403 ttaatttcgaagtctcttatcgattttgtttatgttgcaatta 148445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 388 - 438
Target Start/End: Complemental strand, 19390 - 19340
Alignment:
Q  388 atgaggtagtgaaacactcttggaggtattagtcttgctcttgaataaact 438  Q
    ||||| |||||| |||||||||||||||||| ||  |||||||||||||||    
T  19390 atgagatagtgatacactcttggaggtattaatccagctcttgaataaact 19340  T

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