View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0493-Insertion-20 (Length: 280)
Name: NF0493-Insertion-20
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493-Insertion-20 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 8 - 261
Target Start/End: Original strand, 4238615 - 4238872
Alignment:
| Q |
8 |
ttaagcactttagttttaggagatgtagccaaaccatttgcagcttctgccatggcccttcttgcctttctctgcctgattccacaagcattgcaaagtg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4238615 |
ttaagcactttagttttaggagatgtagccaaaccatttgcagcttctgccatggcccttcttgcctttctctgcctgattccacaagcattgcaaagtg |
4238714 |
T |
|
| Q |
108 |
actgcaccaacatgttttcatgt----taactatatatgtaaccagatataattcaaatatcaatcaaattaagtttaagtacagaataatacttgcatg |
203 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
4238715 |
actgcaccaacatgttttcatgttaactaactatatatgtaaccagacataattgaaatatcaatcaaattaagtttaagtacggaataatacttgcatg |
4238814 |
T |
|
| Q |
204 |
acaatagtatgatctattgaatattcaactaattaaaaccgtgatataataataaaaa |
261 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4238815 |
actctagtatgatctattgaatattcaactaattaaaaccgtgatataataaaaaaaa |
4238872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 143 - 264
Target Start/End: Original strand, 19920922 - 19921039
Alignment:
| Q |
143 |
taaccagatataattcaaatatcaatcaaattaagtttaagtacagaataatacttgcatgacaatagtatgatctattgaatattcaactaattaaaac |
242 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||| | |||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
19920922 |
taactagatataattcaaata---atcaaattaagtttaag-atggaataatacttgcatgactctagtgtgatctattgaatattcaactaattaaaac |
19921017 |
T |
|
| Q |
243 |
cgtgatataataataaaaatta |
264 |
Q |
| |
|
|||||||||||| ||||||||| |
|
|
| T |
19921018 |
cgtgatataatattaaaaatta |
19921039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 120
Target Start/End: Original strand, 19916007 - 19916113
Alignment:
| Q |
8 |
ttaagcactttagttttaggagatgtagccaaaccatttgcagcttctgccatggcccttcttgcctttctctgcctgattccacaagcattgcaaagtg |
107 |
Q |
| |
|
||||||||||| ||||||| ||||||||||| ||||| ||||| |||||||| |||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
19916007 |
ttaagcactttggttttagtggatgtagccaatccattggcagc------catggcccgtcttgcctttctctgcctgattccacaaccattgcaaagtg |
19916100 |
T |
|
| Q |
108 |
actgcaccaacat |
120 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
19916101 |
acggcaccaacat |
19916113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 110 times since January 2019
Visitors: 3464