View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0493-Insertion-21 (Length: 205)
Name: NF0493-Insertion-21
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493-Insertion-21 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 156; Significance: 4e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 27 - 202
Target Start/End: Original strand, 34705433 - 34705608
Alignment:
| Q |
27 |
cctccaaatggttgagtgttgatgaagaggaaaaatggtttctggtatggtgctacgttattttgtggtgatttctgtcgaatgtataaacagttgttta |
126 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34705433 |
cctccaaatggttgagtgttgatgaagcggacaaatgatttctggtatggtgctacgttattttgtggtgatttctgtcgaatgtataaacagttgttta |
34705532 |
T |
|
| Q |
127 |
tatagatgtcactaatttgtgcttttgtttttgttcagaccctttcatatgacagagttctgaactctgttatgcc |
202 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34705533 |
tataaatgtcactaatttgtgcgtttgtttttgttcagaccctttcatatgacagagttctgaactctgttatgcc |
34705608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 27 - 202
Target Start/End: Complemental strand, 28547768 - 28547593
Alignment:
| Q |
27 |
cctccaaatggttgagtgttgatgaagaggaaaaatggtttctggtatggtgctacgttattttgtggtgatttctgtcgaatgtataaacagttgttta |
126 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
28547768 |
cctccaaatggttgagtgttgatgaagcggacaaatgatttctggtatggtgctacgttattttgtggtgatttctgacgaatgtataaacagttgttta |
28547669 |
T |
|
| Q |
127 |
tatagatgtcactaatttgtgcttttgtttttgttcagaccctttcatatgacagagttctgaactctgttatgcc |
202 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28547668 |
tataaatgtcactaatttgtgcgtttgtttttgttcagaccctttcatatgacagagttctgaactctgttatgcc |
28547593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 27 - 202
Target Start/End: Original strand, 41868642 - 41868817
Alignment:
| Q |
27 |
cctccaaatggttgagtgttgatgaagaggaaaaatggtttctggtatggtgctacgttattttgtggtgatttctgtcgaatgtataaacagttgttta |
126 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
41868642 |
cctccaaatggttgagtgttgatgaagcggacaaatgatttctggtatggtgctacgttattttgtggtgatttctgccgaatgtataaacagttgttta |
41868741 |
T |
|
| Q |
127 |
tatagatgtcactaatttgtgcttttgtttttgttcagaccctttcatatgacagagttctgaactctgttatgcc |
202 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41868742 |
tataaatgtcactaatttgtgcgtttgtttttgttcagaccctttcatatgacagagttctgaactctgttatgcc |
41868817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 333 times since January 2019
Visitors: 3470