View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0493-Insertion-25 (Length: 170)
Name: NF0493-Insertion-25
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493-Insertion-25 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 155; Significance: 1e-82; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 1e-82
Query Start/End: Original strand, 8 - 170
Target Start/End: Complemental strand, 17200625 - 17200463
Alignment:
| Q |
8 |
tgacgtggcataagggccaaaaggaatgtaaccaaacggtcatttattagtaaccaaagtaatcgcccattctccctccaaagcaaaacccaaatgaaaa |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
17200625 |
tgacgtggcataagggccaaaaggaatgtaaccaaacggtcatttattagtaaccaaagtaatcgtccattctccctccaaatcaaaacccaaatgaaaa |
17200526 |
T |
|
| Q |
108 |
cccaccttcatccctcctcaccttccgctggaaaacccaagcaacctcgtcgtcgcgcttcca |
170 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17200525 |
cccaccttcatccctcctcaccttccgctggaaaacccaagcaacctcgtcgtcgcgcttcca |
17200463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1376 times since January 2019
Visitors: 3446