View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0493-Insertion-28 (Length: 141)
Name: NF0493-Insertion-28
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493-Insertion-28 |
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Alignment Details
Target: chr2 (Bit Score: 96; Significance: 2e-47; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 2e-47
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 5083889 - 5083770
Alignment:
| Q |
8 |
gagttaccacttgagttacttcagttgaagagattaaagttgttgaattcgagctacaatgattttgttggagaaattccttcaaggataggggagttat |
107 |
Q |
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| T |
5083889 |
gagttaccacatgagttacttcagttgaagagattgaaattgttgaatttgagcaacaatgattttgttggagaaattccttcaaggataggggacttat |
5083790 |
T |
|
| Q |
108 |
caaaacttcaacaattggat |
127 |
Q |
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|||||||||||||||||||| |
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| T |
5083789 |
caaaacttcaacaattggat |
5083770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 7e-44
Query Start/End: Original strand, 8 - 141
Target Start/End: Original strand, 5094179 - 5094312
Alignment:
| Q |
8 |
gagttaccacttgagttacttcagttgaagagattaaagttgttgaattcgagctacaatgattttgttggagaaattccttcaaggataggggagttat |
107 |
Q |
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|||||||||| |||||| ||||||||||| ||||| || |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5094179 |
gagttaccacatgagttgcttcagttgaaaagattgaaattgttgaatttaagcaacaatgattttgttggagaaattccttcaaggataggggagttat |
5094278 |
T |
|
| Q |
108 |
caaaacttcaacaattggatcttggctttaataa |
141 |
Q |
| |
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|
| T |
5094279 |
caaaacttcaacaattggatattagctataataa |
5094312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 78; E-Value: 1e-36
Query Start/End: Original strand, 8 - 141
Target Start/End: Original strand, 5111182 - 5111315
Alignment:
| Q |
8 |
gagttaccacttgagttacttcagttgaagagattaaagttgttgaattcgagctacaatgattttgttggagaaattccttcaaggataggggagttat |
107 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| || | |||| ||| ||| |||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
5111182 |
gagttaccacatgagttacttcagttgaagagattgaaatggttggatttgagtgacaatgattttgttggagaaattccttcaaggataggggacttag |
5111281 |
T |
|
| Q |
108 |
caaaacttcaacaattggatcttggctttaataa |
141 |
Q |
| |
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|
| T |
5111282 |
caaaacttcatcatttggatctttactttaataa |
5111315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 88
Target Start/End: Original strand, 16873489 - 16873519
Alignment:
| Q |
58 |
gagctacaatgattttgttggagaaattcct |
88 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
16873489 |
gagctacaatgattttgttggagaaattcct |
16873519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 87
Target Start/End: Complemental strand, 14427671 - 14427589
Alignment:
| Q |
8 |
gagttaccacttgagttacttcagttg---aagagattaaagttgttgaattcgagctacaatgattttgttggagaaattcc |
87 |
Q |
| |
|
|||||||||| ||||||| |||| ||| || ||||| || ||||| ||| |||| ||||||||||||||||||||||||| |
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| T |
14427671 |
gagttaccacatgagttatttcaattgcataatagattgaaaatgttggatttgagcaacaatgattttgttggagaaattcc |
14427589 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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