View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0493-Insertion-4 (Length: 614)
Name: NF0493-Insertion-4
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493-Insertion-4 |
 | |
|
| [»] chr4 (13 HSPs) |
| |
|
| [»] chr1 (6 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 463; Significance: 0; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 100 - 614
Target Start/End: Original strand, 23408328 - 23408842
Alignment:
| Q |
100 |
aggaggaatccaactatattttatgagaaaatgtattcagtctttgatacccctagatcaatcattcaaaacagagagaaacccaattctacaagcaatt |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23408328 |
aggaggaatccaactatattttatgagaaaatgtattccgtctttgatacccctagatcaatcattcaaaacagagagaaacccaattctacaagcaatt |
23408427 |
T |
|
| Q |
200 |
ttcaagtcaaatatcattaactccatttcttacacaaaagacatcaacagatcccattagttcattacaactcagaaaattaaaacactaagaaaccaat |
299 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23408428 |
ttcatgtcaaatatcattaactccatttcttacacaaaagacatcaacagatcccattagttcattacaactcagaaaattaaaacactaagaaaccaat |
23408527 |
T |
|
| Q |
300 |
aaacataaacgaaatgtctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctga |
399 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
23408528 |
aaacataatcgaaatgtctaagagctagtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattctccaggaagaacaagtctga |
23408627 |
T |
|
| Q |
400 |
ctgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaa |
499 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23408628 |
ccgcggtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaa |
23408727 |
T |
|
| Q |
500 |
actgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttctacattcttc |
599 |
Q |
| |
|
||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
23408728 |
actgttcatgatacccatcgctttgcttgagataccaatgtctgggtgaacttgtttcagaactttgaagatgtagatcttgtatgtttctacattcttc |
23408827 |
T |
|
| Q |
600 |
ttgcttctcttcttc |
614 |
Q |
| |
|
|| |||||||||||| |
|
|
| T |
23408828 |
ttacttctcttcttc |
23408842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 315 - 614
Target Start/End: Original strand, 23415712 - 23416011
Alignment:
| Q |
315 |
gtctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaattt |
414 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23415712 |
gtctaagagctagtaaacttagtcacagccttggtaccctcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaattt |
23415811 |
T |
|
| Q |
415 |
cccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcc |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
23415812 |
cccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacc |
23415911 |
T |
|
| Q |
515 |
catggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttctacattcttcttgcttctcttcttc |
614 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| || ||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
23415912 |
catggccttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttcaacattcttcttgcttctcttcttc |
23416011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 316 - 614
Target Start/End: Original strand, 23453376 - 23453674
Alignment:
| Q |
316 |
tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttc |
415 |
Q |
| |
|
||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
23453376 |
tctaagaactagtaaacttggtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagactgactgcagtctgaatttc |
23453475 |
T |
|
| Q |
416 |
ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattccc |
515 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
23453476 |
ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgataccc |
23453575 |
T |
|
| Q |
516 |
atggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttctacattcttcttgcttctcttcttc |
614 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| || ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23453576 |
atggccttgcttgagataccaatgtctgggtgaacatgattcagaactttgaagatgtagatcttgtatgtttctacattcttcttgcttctcttcttc |
23453674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 316 - 614
Target Start/End: Complemental strand, 23869006 - 23868708
Alignment:
| Q |
316 |
tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttc |
415 |
Q |
| |
|
||||||| || || |||||||||||||| || || ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
23869006 |
tctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgtttggccaattcaccaggaagaacaagtctgacagcagtctgaatttc |
23868907 |
T |
|
| Q |
416 |
ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattccc |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23868906 |
ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagtttctcgaagatatcattgatgaaactgttcattattccc |
23868807 |
T |
|
| Q |
516 |
atggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttctacattcttcttgcttctcttcttc |
614 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || ||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
23868806 |
atggctttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttcaacattcttcttgcttctcttcttc |
23868708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 316 - 614
Target Start/End: Complemental strand, 24307497 - 24307199
Alignment:
| Q |
316 |
tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttc |
415 |
Q |
| |
|
||||||| || || ||||| |||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
24307497 |
tctaagaactagtgaacttggtcacagctttggtaccctcagaaacagcatgcttggccaattcaccaggaagaacaagtctgacagcagtctgaatttc |
24307398 |
T |
|
| Q |
416 |
ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattccc |
515 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24307397 |
ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagctagtttctcgaagatatcattgatgaaactgttcattattccc |
24307298 |
T |
|
| Q |
516 |
atggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttctacattcttcttgcttctcttcttc |
614 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || ||||| || ||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
24307297 |
atggctttgcttgagataccaatgtctgggtgaacttgtttcagaaccttgaagatatagatcttgtatgtttcaacattcttcttgcttctcttcttc |
24307199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 316 - 614
Target Start/End: Complemental strand, 23886101 - 23885803
Alignment:
| Q |
316 |
tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttc |
415 |
Q |
| |
|
||||||| || |||||||| |||||||| ||||| || ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
23886101 |
tctaagaactagtaaacttggtcacagctttggttccctcagagacagcatgcttggccaattcaccaggaagaacaagcctgactgcagtctgaatttc |
23886002 |
T |
|
| Q |
416 |
ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattccc |
515 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
23886001 |
ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgataccc |
23885902 |
T |
|
| Q |
516 |
atggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttctacattcttcttgcttctcttcttc |
614 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| || ||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
23885901 |
atggccttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttcaacattcttcttgcttctcttcttc |
23885803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 316 - 614
Target Start/End: Complemental strand, 23402348 - 23402050
Alignment:
| Q |
316 |
tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttc |
415 |
Q |
| |
|
||||||| || |||||||| |||||||| ||||| || || || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
23402348 |
tctaagaactagtaaacttggtcacagctttggttccctctgagacagcatgcttggccaattcaccaggaagaacaagcctgactgcagtctgaatttc |
23402249 |
T |
|
| Q |
416 |
ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattccc |
515 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
23402248 |
ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgataccc |
23402149 |
T |
|
| Q |
516 |
atggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttctacattcttcttgcttctcttcttc |
614 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| || ||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
23402148 |
atggccttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttctacattcttcttacttctcttcttc |
23402050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 316 - 614
Target Start/End: Complemental strand, 26833009 - 26832711
Alignment:
| Q |
316 |
tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttc |
415 |
Q |
| |
|
||||||| || ||||||||||| ||||||||||| || ||||||||||||||||||||||||||||| || |||||||| ||||| || ||||||||||| |
|
|
| T |
26833009 |
tctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaatttc |
26832910 |
T |
|
| Q |
416 |
ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattccc |
515 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
26832909 |
ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcgagtttctcgaagatatcattgatgaaactgttcatgataccc |
26832810 |
T |
|
| Q |
516 |
atggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttctacattcttcttgcttctcttcttc |
614 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
26832809 |
atggctttgcttgagataccaatgtctgggtgaacttgtttcagaaccttgaagatgtagatcttgtatgtttcaacgctcttcttgcttctcttcttc |
26832711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 316 - 614
Target Start/End: Complemental strand, 26434298 - 26434000
Alignment:
| Q |
316 |
tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttc |
415 |
Q |
| |
|
||||||| || ||||||||||| ||||||||||| || ||||||||||||||||||||||||||||| || |||||||| ||||| || ||||||||||| |
|
|
| T |
26434298 |
tctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaatttc |
26434199 |
T |
|
| Q |
416 |
ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattccc |
515 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
26434198 |
ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcgagtttctcgaagatatcattgatgaaactgttcatgataccc |
26434099 |
T |
|
| Q |
516 |
atggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttctacattcttcttgcttctcttcttc |
614 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| || ||||| |||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
26434098 |
atggctttgcttgagataccaatgtctggatgaacttgtttcagaaccttgaagatgtagatcttgtatgtttcaacgctcttcttgcttctcttcttc |
26434000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 316 - 614
Target Start/End: Complemental strand, 26436078 - 26435780
Alignment:
| Q |
316 |
tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttc |
415 |
Q |
| |
|
||||||| || ||||||||||| ||||||||||| || ||||||||| ||||||||||||||||||| || |||||||| ||||| || ||||||||||| |
|
|
| T |
26436078 |
tctaagaactggtaaacttagtgacagccttggtaccctcagaaacatcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaatttc |
26435979 |
T |
|
| Q |
416 |
ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattccc |
515 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
26435978 |
ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggaagattcttgagtgagtttctcgaagatatcattgatgaaactgttcatgataccc |
26435879 |
T |
|
| Q |
516 |
atggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttctacattcttcttgcttctcttcttc |
614 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
26435878 |
atggctttgcttgagataccaatgtctgggtgaacttgtttcagaaccttgaagatgtagatcttgtatgtttcaacgctcttcttgcttctcttcttc |
26435780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 316 - 614
Target Start/End: Original strand, 34662045 - 34662343
Alignment:
| Q |
316 |
tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttc |
415 |
Q |
| |
|
||||||| ||||||||||| || ||||| ||||| || ||||| ||||||||||| |||||||| |||||||||||||| || || |||||||||||||| |
|
|
| T |
34662045 |
tctaagaacttgtaaacttcgttacagctttggtaccctcagacacagcatgcttagccaattctccaggaagaacaagcctaacagcagtctgaatttc |
34662144 |
T |
|
| Q |
416 |
ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattccc |
515 |
Q |
| |
|
||| ||||| || || ||||||||||| || | ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
34662145 |
cctcgaagttatcgtcggcttcttgttataccttgcaagtctggaagattcttgagcgagcttctcgaagatatcattgatgaaactgttcataataccc |
34662244 |
T |
|
| Q |
516 |
atggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttctacattcttcttgcttctcttcttc |
614 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| || ||||| |||||||||||||| ||||| || |||||||| ||||||||||| |
|
|
| T |
34662245 |
atggctttgcttgagataccaatgtcagggtgaacttgtttcagaaccttgaagatgtagatcttgtaggtttcaacgctcttcttgtttctcttcttc |
34662343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 368 - 500
Target Start/End: Original strand, 23451788 - 23451920
Alignment:
| Q |
368 |
cttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattct |
467 |
Q |
| |
|
||||||||||||||| || |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
23451788 |
cttggccaattcaccgggcagaacaagcctgactgcggtctgaatttcccttgaagtgattgttggcttcttgttgtagcgagcaagtctggagtattct |
23451887 |
T |
|
| Q |
468 |
tgagcaagcttctcgaagatatcattgatgaaa |
500 |
Q |
| |
|
||||| |||||||| |||||||| ||||||||| |
|
|
| T |
23451888 |
tgagcgagcttctcaaagatatcgttgatgaaa |
23451920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 23408269 - 23408326
Alignment:
| Q |
8 |
ccaagatcaaattacagtgtcaataaaattgattaattataaacaatcacaatccaca |
65 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
23408269 |
ccaagatcaaattacagtgtcagtaaaattgattaattataaacaatcacaacccaca |
23408326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 108; Significance: 6e-54; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 339 - 614
Target Start/End: Complemental strand, 41670651 - 41670376
Alignment:
| Q |
339 |
acagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttct |
438 |
Q |
| |
|
||||||||||| || ||||| ||||||||||| || | |||||| || |||||||| | || |||||||| || |||| ||||||||||| ||||||| |
|
|
| T |
41670651 |
acagccttggttccctcagagacagcatgcttagcaagttcaccggggagaacaagacgaacagcagtctgtatctcccgagaagtgattgtaggcttct |
41670552 |
T |
|
| Q |
439 |
tgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaat |
538 |
Q |
| |
|
||||||| | ||||||||||| ||||| ||||| |||||||| ||||||||||||||||| |||||||| || ||||| || ||||||||||||||||| |
|
|
| T |
41670551 |
tgttgtacctcgcaagtctggaagattcctgagcgagcttctcaaagatatcattgatgaagctgttcatgatccccatagccttgcttgagataccaat |
41670452 |
T |
|
| Q |
539 |
gtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttctacattcttcttgcttctcttcttc |
614 |
Q |
| |
|
||| || ||||| || || || || ||||| |||||||||||||| ||||| || |||||||| ||||||||||| |
|
|
| T |
41670451 |
gtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttcaacgctcttcttgtttctcttcttc |
41670376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 319 - 610
Target Start/End: Complemental strand, 40796040 - 40795749
Alignment:
| Q |
319 |
aagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttccct |
418 |
Q |
| |
|
||||||||||||| ||||| || || ||||| || || || ||||| |||||||| | ||| || |||||||| || | || ||||||||||| || | |
|
|
| T |
40796040 |
aagagcttgtaaatttagtgactgctttggttccctcggagacagcgtgcttggcaagttcgccgggaagaacgagacgaacagcagtctgaatctcacg |
40795941 |
T |
|
| Q |
419 |
tgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatg |
518 |
Q |
| |
|
|| ||||| || || ||||||||||| ||||| |||||||||||||| ||||| |||||||| ||||| |||||||||||||||||||| || ||||| |
|
|
| T |
40795940 |
agaggtgatggtaggtttcttgttgtagcgagcgagtctggatgattcctgagcgagcttctcaaagatgtcattgatgaaactgttcatgatccccata |
40795841 |
T |
|
| Q |
519 |
gctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttctacattcttcttgcttctctt |
610 |
Q |
| |
|
|| ||||| ||||| |||||||| || ||||| || || || || ||||| |||||||||||||| |||||||| |||||||| ||||||| |
|
|
| T |
40795840 |
gccttgctggagattccaatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctt |
40795749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 327 - 441
Target Start/End: Complemental strand, 33216708 - 33216594
Alignment:
| Q |
327 |
gtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtga |
426 |
Q |
| |
|
|||||||| |||||||||||||| || |||||||||||||| ||||||||||||||| |||||||||||||||| ||||| ||||||| ||||||||||| |
|
|
| T |
33216708 |
gtaaacttggtcacagccttggtaccctcagaaacagcatgtttggccaattcaccaagaagaacaagtctgacagcagtttgaattttccttgaagtga |
33216609 |
T |
|
| Q |
427 |
ttgttggcttcttgt |
441 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
33216608 |
ttgttggcttcttgt |
33216594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 339 - 589
Target Start/End: Complemental strand, 29391717 - 29391467
Alignment:
| Q |
339 |
acagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttct |
438 |
Q |
| |
|
||||||||||| ||||| ||||||||||| || ||||||||||| |||||||| | | || || || ||||| ||||| || || || || || |||| |
|
|
| T |
29391717 |
acagccttggttccttcggaaacagcatgtttcgccaattcaccgggaagaaccaaacgcacagccgtttgaatctccctcgacgtaatcgtcggtttct |
29391618 |
T |
|
| Q |
439 |
tgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaat |
538 |
Q |
| |
|
||||||||||||| | ||| || | ||| ||||| || ||||| |||||||||||||||||||||||||| || ||||| |||||| || ||||| || |
|
|
| T |
29391617 |
tgttgtaacgagccaatctagaagcttcctgagcgagtttctcaaagatatcattgatgaaactgttcataatccccatagctttggaagaaatacctat |
29391518 |
T |
|
| Q |
539 |
gtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc |
589 |
Q |
| |
|
|| || ||||| ||||| || || ||||| ||||| ||||| || ||||| |
|
|
| T |
29391517 |
atcaggatgaacctgtttgagaaccttgaagatgtaaatcttataggtttc |
29391467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 394
Target Start/End: Complemental strand, 45576477 - 45576399
Alignment:
| Q |
316 |
tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaag |
394 |
Q |
| |
|
||||||||||||| || || |||||||| ||||| || ||||||||| ||||||| ||||||||| | || |||||||| |
|
|
| T |
45576477 |
tctaagagcttgtgaatttggtcacagctttggtaccctcagaaacaacatgcttagccaattcatcgggcagaacaag |
45576399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 461 - 497
Target Start/End: Complemental strand, 33216594 - 33216558
Alignment:
| Q |
461 |
tgattcttgagcaagcttctcgaagatatcattgatg |
497 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
33216594 |
tgattcttgagcaagcttcacgaagatatcattgatg |
33216558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 8e-35; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 318 - 441
Target Start/End: Complemental strand, 47317554 - 47317431
Alignment:
| Q |
318 |
taagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttccc |
417 |
Q |
| |
|
||||| || |||||||| |||||||| ||||| || ||||||||| |||| |||||||||||||||||||||| ||||||||| |||| |||||||||| |
|
|
| T |
47317554 |
taagaactagtaaacttggtcacagctttggtaccctcagaaacaacatgtttggccaattcaccaggaagaataagtctgacaacagtttgaatttccc |
47317455 |
T |
|
| Q |
418 |
ttgaagtgattgttggcttcttgt |
441 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
47317454 |
ttgaagtgattgttggcttcttgt |
47317431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 339 - 614
Target Start/End: Original strand, 40180297 - 40180572
Alignment:
| Q |
339 |
acagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttct |
438 |
Q |
| |
|
|||||||| || ||||||||||||||||| || |||||||| ||||||||||| | ||| || ||||| ||||| ||||| ||||| || || ||||||| |
|
|
| T |
40180297 |
acagccttagtcccttcagaaacagcatgtttagccaattctccaggaagaaccaatctaacagcagtttgaatctccctagaagtaatcgtcggcttct |
40180396 |
T |
|
| Q |
439 |
tgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaat |
538 |
Q |
| |
|
|||| || | ||| | | || ||||| ||||| || ||||| |||||||| || |||||||||||||| |||||||| || |||||||| | ||| || |
|
|
| T |
40180397 |
tgttatacctagccaaacgagacgattcctgagcgagtttctcaaagatatcgttaatgaaactgttcatgattcccatagccttgcttgaaacaccgat |
40180496 |
T |
|
| Q |
539 |
gtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttctacattcttcttgcttctcttcttc |
614 |
Q |
| |
|
|| || ||||| |||||||| || ||||| ||||| |||||||| ||||| || | ||||| ||||||||||| |
|
|
| T |
40180497 |
atcaggatgaacctgtttcagaaccttgaagatgtatatcttgtaggtttcaacgcttttcttcgttctcttcttc |
40180572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 461 - 497
Target Start/End: Complemental strand, 47317431 - 47317395
Alignment:
| Q |
461 |
tgattcttgagcaagcttctcgaagatatcattgatg |
497 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
47317431 |
tgattcttgagcaagcttcacgaagatatcattgatg |
47317395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 354 - 406
Target Start/End: Complemental strand, 14715485 - 14715433
Alignment:
| Q |
354 |
tcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagt |
406 |
Q |
| |
|
||||| ||| |||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
14715485 |
tcagacacaacatgcttggccaattctccaggaagaacaagtctcactgcagt |
14715433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 464 - 589
Target Start/End: Complemental strand, 29684826 - 29684701
Alignment:
| Q |
464 |
ttcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtact |
563 |
Q |
| |
|
||||||||| || |||| |||||||| || | ||||||||| || | |||||| ||||| ||||| | ||||||| | || ||||||||||| || || |
|
|
| T |
29684826 |
ttcttgagcgagtttcttaaagatatcgttcacgaaactgttaataactcccatagctttacttgaaacaccaatggcaggatgaacttgtttgagaacc |
29684727 |
T |
|
| Q |
564 |
ttgaatatgtagatcttgtatgtttc |
589 |
Q |
| |
|
|||||||| || |||||||| ||||| |
|
|
| T |
29684726 |
ttgaatatatatatcttgtaggtttc |
29684701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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