View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0493-Insertion-5 (Length: 613)
Name: NF0493-Insertion-5
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493-Insertion-5 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 586; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 586; E-Value: 0
Query Start/End: Original strand, 8 - 613
Target Start/End: Original strand, 6969112 - 6969717
Alignment:
| Q |
8 |
actatctcatagaccaatgcatctccctaaaacaactcaaacatgttcatgcacaaatcatcctccatggacttgccacccaagttctcacattaggcaa |
107 |
Q |
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| T |
6969112 |
actatctcatagaccaatgcatctccctaaaacaactcaaacatgttcatgcacaaatcatcctccatggacttgccacccaagttctcacattaggcaa |
6969211 |
T |
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| Q |
108 |
attagtctcctccagtgtccatcttcgagatcttcgttacgcacacaaactgtttgatcaaattcctcaaccaaataaattcatgtttaaccatttaata |
207 |
Q |
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| T |
6969212 |
attagtctcctccagtgtccaacttcgagatcttcgttacgcacacaaactgtttgatcaaattcctcaaccaaataaattcatgtttaaccatttaata |
6969311 |
T |
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| Q |
208 |
aagggttattctaattccagtgacccaattaagtctttgttactttaccgtcgaatggtgtgtgatggtattttaccaaaccagtttaccatcccttttg |
307 |
Q |
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| T |
6969312 |
aagggttattctaattccagtgacccaattaagtctttgttactttaccgtcgaatggtgtgtgatggtattttaccaaaccagtttaccatcccttttg |
6969411 |
T |
|
| Q |
308 |
ttctcaaagcttgtgctgcgaaatcgtgttattggcttggtgtttgtgttcatgctcagtcttttaagcttggaatggggtcacatgcttgtgttcagaa |
407 |
Q |
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| T |
6969412 |
ttctcaaagcttgtgctgcgaaatcgtgttattggcttggtgtttgtgttcatgctcagtcttttaagcttggaatggggtcacatgcttgtgttcagaa |
6969511 |
T |
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| Q |
408 |
tgcaattttgaatatttatgttgcttgtggtttgattacaagtgcaaggagagtgtttgatgatatttctgaaaggaccttggtctcatggaattcaatg |
507 |
Q |
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| T |
6969512 |
tgcaattttgaatatttatgttgcttgtggtttgataacaagtgcaaggagagtgtttgatgatatttctgaaaggaccttggtctcatggaattcaatg |
6969611 |
T |
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| Q |
508 |
attaatgggtattctaaaatgggcaggtctgaagaagttgttttgatgtttcgagaaatgcaagaaattggattggagcctgatgtgtttacgttggttg |
607 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
6969612 |
attaatgggtattctaaaatgggcaggtctgaagaagctgttttgatgtttcgagaaatgcaagaagttggattggagcctgatgtgtttacgttggttg |
6969711 |
T |
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| Q |
608 |
gtttgc |
613 |
Q |
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| T |
6969712 |
gcttgc |
6969717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 148 - 180
Target Start/End: Complemental strand, 20817836 - 20817804
Alignment:
| Q |
148 |
gcacacaaactgtttgatcaaattcctcaacca |
180 |
Q |
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| T |
20817836 |
gcacacaaactgtttgatcaaattcctcaacca |
20817804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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