View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0493-Insertion-6 (Length: 612)
Name: NF0493-Insertion-6
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493-Insertion-6 |
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Alignment Details
Target: chr1 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 14 - 591
Target Start/End: Original strand, 48107897 - 48108475
Alignment:
| Q |
14 |
attacctcaatagtagcaaaataatcgtagtccaaagaatgaacgcctagccctgcatatatggtgtgaagatatatatgttagatattaaaagaattgt |
113 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
48107897 |
attacctcaatagtagcaaaataatcatagtccaaagaatgaacgcctagccctgcatatatggtgtgaagatatatatgttagatattaaaagaatagt |
48107996 |
T |
|
| Q |
114 |
agcactgaattatagag--agggagagattgaaacctgagataaataaaaggaaagaggtggtgatgaacaacaaattgcagcattttgcagtaaccttc |
211 |
Q |
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| T |
48107997 |
agcactgaattatagagagagggagagattgaaacctgagataaataaaaggaaagaggtggtgatgaacaacaaattgcagcattttgcagtaaccttc |
48108096 |
T |
|
| Q |
212 |
attttagcgctaatcatcattatataaaataaaaacgtcccttatacaatgaaccctatagggattaactggctatttataagcccgtgcattgcctgtg |
311 |
Q |
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|||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48108097 |
attttagcactaatcatcattatataaagtaaaaacgtcccttatacaatgaa-cctatagggattaactggctatttataagcccgtgcattgcctgtg |
48108195 |
T |
|
| Q |
312 |
agctttgaaaattcggcttaaaannnnnnnaagnnnnnnntggttgataaaattggatagcaatagtaagaaataaagaatgagagattttgnnnnnnnc |
411 |
Q |
| |
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|||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
48108196 |
agctttgaaaattcggtttaaaaattttttaagaaaaaaatggttgataaaattggatagcaatagtaagaaataaagaatgagagattttgtttttttc |
48108295 |
T |
|
| Q |
412 |
ttccttataatctattatagaatttaaatattttgttttgttatttaaaaagtgcaatcatatcgtaaaatctaactcaaccgactatactaatattgtt |
511 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
48108296 |
ttccttataatctattatagaatttaaatattttgttttgttatttaaaaagtgcaatcatatcctaaaatctaactcaaccgactatactaatattgtt |
48108395 |
T |
|
| Q |
512 |
agaatgaatattttttgtagcgtcacacattatccaaaagttttaacttttgtggtgtttatcattttgtttacaacaag |
591 |
Q |
| |
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| T |
48108396 |
agaatgaatattatttgtagcgtcacacattatccaaaagttttaacttttgtggtgtttatcattttatttacaacaag |
48108475 |
T |
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