View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0493-Insertion-7 (Length: 559)
Name: NF0493-Insertion-7
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493-Insertion-7 |
 | |
|
| [»] chr5 (3 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 520; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 8 - 559
Target Start/End: Complemental strand, 3084295 - 3083744
Alignment:
| Q |
8 |
tgatctaacactacactgatgttgtgttccctaaggtgatgtgctgctccaattccactcaacatcagaagttgtgggctacctagtgcaccagctgata |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3084295 |
tgatctaacactacactgatgttgtgttccctaaggtgatgtcctgctccaattccactcaacatcagaagttgtgggctacctagtgcaccagctgata |
3084196 |
T |
|
| Q |
108 |
ctatgatctcattcttagtcccatgactcaagtatgctctgtgttctgtccctcgcgcatccttgaatagaactccatgtgcaacaggccttgaatttga |
207 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
3084195 |
ctatgatctcattcttagtcccatgattcaagtatgccctgtgttctgtccctcgtgcatccttgtatagaactccatgtgcaacaggccttgaatttga |
3084096 |
T |
|
| Q |
208 |
tctttctgtttaatatcatacaccatgcattctcaaaataattattacatggaccaagtcaccaaaataaataggaaaagagtgaggaaattaacatttt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
3084095 |
tctttctgtttaatatcatacaccatgcattcacaaaataattattacatggaccaagtcaccaaaataaatgggaaaagagtgaggaaattaacatttt |
3083996 |
T |
|
| Q |
308 |
agtactcatatttagtcattcaaattcgagaaattgcaatttagtctcttaaaatgaaccgttagtcaatttaatcattgttaaaatttagcaaatttaa |
407 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3083995 |
agtactcatatttagtcattcgaattcgagaaattgcaatttagtctcttaaaatgaaccgttagtcaatttaatcattgttaaaatttagcaaatttaa |
3083896 |
T |
|
| Q |
408 |
gagatatcttggtgaaggaactaaattattgactttctttattttaagagactaacttactattttgcaaatttgaaaaactaaatttctggactcttat |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3083895 |
gagatatcttggtgaaggaactaaattattgactttctttattttaagagactaacttactattttgcaaatttgaaaaactaaatttctggactcttat |
3083796 |
T |
|
| Q |
508 |
aatatggaagaatggaatattcatttactagtaaaagaatgcacattgctta |
559 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3083795 |
aatatggaagaatggaatattcatttactagtaaaagaatgcacattgctta |
3083744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 8 - 280
Target Start/End: Complemental strand, 3093175 - 3092903
Alignment:
| Q |
8 |
tgatctaacactacactgatgttgtgttccctaaggtgatgtgctgctccaattccactcaacatcagaagttgtgggctacctagtgcaccagctgata |
107 |
Q |
| |
|
|||| |||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3093175 |
tgatgtaacactacactgatgttatgttgcttaaggtgatgtgctgctccaattccactcaacatcagaagttgtgggctacctagtgcaccagctgata |
3093076 |
T |
|
| Q |
108 |
ctatgatctcattcttagtcccatgactcaagtatgctctgtgttctgtccctcgcgcatccttgaatagaactccatgtgcaacaggccttgaatttga |
207 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||| ||| ||||| || | |
|
|
| T |
3093075 |
ctatgatctcattcttagtcccatgattcaagtatgccctgtgttctgtccctcgtgcatccttgtatagaactccatgtgcaattggctttgaacttaa |
3092976 |
T |
|
| Q |
208 |
tctttctgtttaatatcatacaccatgcattctcaaaataattattacatggaccaagtcaccaaaataaata |
280 |
Q |
| |
|
|| |||||| ||||||| ||| ||| |||| || ||| || |||| ||||||| || || ||||||||||| |
|
|
| T |
3092975 |
tccacctgtttgatatcatgcacaatgtattcacataatcatcattaaatggaccgagacaacaaaataaata |
3092903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 523 - 556
Target Start/End: Complemental strand, 3092196 - 3092163
Alignment:
| Q |
523 |
aatattcatttactagtaaaagaatgcacattgc |
556 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |
|
|
| T |
3092196 |
aatattcatttgctagtaaaagaatgcacattgc |
3092163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 454 - 494
Target Start/End: Complemental strand, 41590839 - 41590799
Alignment:
| Q |
454 |
agagactaacttactattttgcaaatttgaaaaactaaatt |
494 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
41590839 |
agagactaaattactattttgcaaatttgaaaaactgaatt |
41590799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 450 - 494
Target Start/End: Complemental strand, 41513868 - 41513824
Alignment:
| Q |
450 |
tttaagagactaacttactattttgcaaatttgaaaaactaaatt |
494 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
41513868 |
tttaagggactaacttgctattttgcaaatttgaaggactaaatt |
41513824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 450 - 494
Target Start/End: Original strand, 40213407 - 40213451
Alignment:
| Q |
450 |
tttaagagactaacttactattttgcaaatttgaaaaactaaatt |
494 |
Q |
| |
|
||||||||||||| |||| ||||||||||||| || ||||||||| |
|
|
| T |
40213407 |
tttaagagactaaattacaattttgcaaatttaaataactaaatt |
40213451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1393 times since January 2019
Visitors: 3446