View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0493-Insertion-9 (Length: 512)
Name: NF0493-Insertion-9
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493-Insertion-9 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 8 - 512
Target Start/End: Original strand, 54539807 - 54540312
Alignment:
| Q |
8 |
gaagggttgcgatttggaaatgttagtgatattttgatgaaatgttttccatagaattcaatgttattttgaatattttggaaaaaagtttgtagtagaa |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
54539807 |
gaagggttgcgatttggaaatgttagtgatattttgatgaaatgttttccatagaattcaatgttattttgaatagtttggaaaaaagtttgtagtagaa |
54539906 |
T |
|
| Q |
108 |
gcttcttgcctatttttatcttctatagttgcaagcannnnnnncgtaacttcaagtgaatcaacatttgtttagtgtccatcacgagcctattcatatc |
207 |
Q |
| |
|
||||||| |||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
54539907 |
gcttcttacctatttttaccttctatagttgcgagcatttttttcgtaacttcaagtgaatcaacatttgtttagtgtccatcacgagcctgttcatatc |
54540006 |
T |
|
| Q |
208 |
ttaatggagatgggagctctatcttcaatcaaggtgtttgagggtctcaagagtttgttaatgagacatgatggtcgctatatctttgggttccatggga |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
54540007 |
ttaatggagatgggagctctatcttcaatcaaggtgtttgagggtttcaagagtttgttaatgagtcatgatggtcgctatatctttgggttccatggga |
54540106 |
T |
|
| Q |
308 |
gtattggtgctcaatcgatcttcatgttggagttcttgttgggctcaaactttgctaggaagcatgtttcaggtacattatgttattctgaatcttagta |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54540107 |
gtattggtgctcaatcgatcttcatgttggagttcttgttgggctcaaactttgctaggaaacatgtttcaggtacattatgttattctgaatcttagta |
54540206 |
T |
|
| Q |
408 |
aatggttgaattagggcatagttaga-ccatgttttacatcattatgctactttttgagcttattgaaccctttataactaaatagtggatgatctttat |
506 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
54540207 |
aatggttgaattagggcatagttagacccatgttttacatcattatgctacttgttgagcttattgaaccctttatagctaaatagtggatgatctttat |
54540306 |
T |
|
| Q |
507 |
tcatca |
512 |
Q |
| |
|
|||||| |
|
|
| T |
54540307 |
tcatca |
54540312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University