View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0493_1D_low_10 (Length: 345)
Name: NF0493_1D_low_10
Description: NF0493_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493_1D_low_10 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 17 - 345
Target Start/End: Original strand, 2785917 - 2786245
Alignment:
| Q |
17 |
aacctgtgtagaagcagtaagatatcccgaactagtaattactgatggtccagaaaatgccgtgccacgctcaatttttacgccacgctcaacttttacc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
2785917 |
aacctgtgtagaagcagtaagatatcccgaactagtaattactggcggtccagaagatgtcgtgccacgctcaatttttacgacacgctcaacttttacc |
2786016 |
T |
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| Q |
117 |
ggcaatggctcaacttttacaggcactggctcaacttttacagtagcaggagtcacattcacattaggtattggctgccggttagcaatagatccattca |
216 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
2786017 |
ggcaatggctcaacttttacaggcactggctcagcttttacagtagcaggagtcacactgacattaggtattggctgccggttagcaatagatccattca |
2786116 |
T |
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| Q |
217 |
ccgatggcaatgaagatgggggtgcccccgtaactggtgcgacagatacatcatcaactttaacatgaatttgatttgaaggcaagtttgttgttccgga |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2786117 |
ccgatggcaatgaagatgggggtgcccccgtaactggtgcgacagatacatcgtcaactttaacatgaatttgatttgaaggcaagtttgttgttccgga |
2786216 |
T |
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| Q |
317 |
aggactcaaggcagtgcgggcttccctga |
345 |
Q |
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| T |
2786217 |
aggactcaaggcagtgcgggcttccctga |
2786245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 219 - 343
Target Start/End: Complemental strand, 22518378 - 22518257
Alignment:
| Q |
219 |
gatggcaatgaagatgggggtgcccccgtaactggtgcgacagatacatcatcaactttaacatgaatttgatttgaaggcaagtttgttgttccggaag |
318 |
Q |
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| T |
22518378 |
gatggcaatgaagatgggggtgcccccgtaactggtgtggcagatacagcgtctacttttacaggactttgatttgaaggcatgt---tagttccaggtc |
22518282 |
T |
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| Q |
319 |
gactcaaggcagtgcgggcttccct |
343 |
Q |
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| T |
22518281 |
gactcaaggcactgcgggcttccct |
22518257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 150 - 217
Target Start/End: Complemental strand, 22519795 - 22519728
Alignment:
| Q |
150 |
acttttacagtagcaggagtcacattcacattaggtattggctgccggttagcaatagatccattcac |
217 |
Q |
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||||||||||||||||||||||||||| || ||||||||| |||||||| | ||||||||||||||| |
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| T |
22519795 |
acttttacagtagcaggagtcacattcccagcaggtattggttgccggttcggaatagatccattcac |
22519728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 22520342 - 22520289
Alignment:
| Q |
17 |
aacctgtgtagaagcagtaagatatcccgaactagtaattactgatggtccaga |
70 |
Q |
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|||||||| ||||||||||||| |||| |||||||| |||||||| |||||||| |
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| T |
22520342 |
aacctgtgcagaagcagtaagagatccagaactagttattactgacggtccaga |
22520289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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