View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0493_1D_low_11 (Length: 344)
Name: NF0493_1D_low_11
Description: NF0493_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493_1D_low_11 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 83 - 344
Target Start/End: Complemental strand, 35755210 - 35754935
Alignment:
| Q |
83 |
tggacaaggtaaatgtagatcaaatgctttgtgctgcaagcaagcaagcaaagactctataaagctgctgaaaggcctgttttgtgaaagtagttgagga |
182 |
Q |
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| T |
35755210 |
tggacaaggtaaatgtagatcaaatgctttgtgctgcaagcaagcaagcaaagactctataaagctgctgaaaggcctgttttgtgaaagtagttgagga |
35755111 |
T |
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| Q |
183 |
tataagttttgttaacttggttaga--------------attacatcatataagaagaattatgtatttttcatttttgttacagtcatcaagatgactt |
268 |
Q |
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| T |
35755110 |
tataagttttgttaacttggttggtgttatatatgtgatattacatcatataagaagaattatgtatttttcagttttgttacagtcatcaagatgactt |
35755011 |
T |
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| Q |
269 |
tatggttcatggtgtttgtaatttaagaattatacctacagtaatgaaatgagaggtataattcttgtaactttga |
344 |
Q |
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| T |
35755010 |
tatggttcatggtgtttgtaatttaagaattatacctacagtaatgaaatgagaggtataattcttgtaactttga |
35754935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 35755292 - 35755263
Alignment:
| Q |
1 |
aaatcattatggcaataatgagtatcagat |
30 |
Q |
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| T |
35755292 |
aaatcattatggcaataatgagtatcagat |
35755263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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