View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0493_1D_low_12 (Length: 331)
Name: NF0493_1D_low_12
Description: NF0493_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493_1D_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 128 - 244
Target Start/End: Original strand, 9416181 - 9416297
Alignment:
| Q |
128 |
acttaaatctctttctccacgttctcccaccggcggcgaaaacgtcataacccataagctttccaccaccaccggagaaaacctcaattcacagactgtt |
227 |
Q |
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| T |
9416181 |
acttaaatctcttcctccacgttctcccacgggcggcgaaaacctcaaaagccagaagcttaccatcaccaccggagaaaacctcaattcacagaccgtt |
9416280 |
T |
|
| Q |
228 |
tctctctgtgtcgctaa |
244 |
Q |
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||||| ||||||||||| |
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| T |
9416281 |
tctctttgtgtcgctaa |
9416297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 128 - 244
Target Start/End: Complemental strand, 30710307 - 30710179
Alignment:
| Q |
128 |
acttaaatctctttctccacgttctcccaccggcggcgaaaacgtcataacccataagcttt------------ccaccaccaccggagaaaacctcaat |
215 |
Q |
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||||||||||||| |||||||||||||| |||||||||||||| ||| |||||| |||||| |||||||||||||||||||||||||| |
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| T |
30710307 |
acttaaatctcttcctccacgttctcccgccggcggcgaaaacctcaaaacccagaagcttaaatctcttcctaccaccaccaccggagaaaacctcaat |
30710208 |
T |
|
| Q |
216 |
tcacagactgtttctctctgtgtcgctaa |
244 |
Q |
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| T |
30710207 |
tcacagactgtttttctctgtgtcactaa |
30710179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 30710460 - 30710424
Alignment:
| Q |
29 |
ctctcattttccaagcaatcaaacaaaaactttcaaa |
65 |
Q |
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|||||||||||||| |||||||||||||||||||||| |
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| T |
30710460 |
ctctcattttccaaccaatcaaacaaaaactttcaaa |
30710424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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