View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0493_1D_low_17 (Length: 266)

Name: NF0493_1D_low_17
Description: NF0493_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0493_1D_low_17
NF0493_1D_low_17
[»] chr1 (3 HSPs)
chr1 (73-258)||(7181713-7181904)
chr1 (79-209)||(7193361-7193491)
chr1 (21-77)||(7181498-7181554)


Alignment Details
Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 73 - 258
Target Start/End: Original strand, 7181713 - 7181904
Alignment:
Q  73 tgttagatggaagagttgtgtttataaatagagcaata------gccagaccaataatatgaaccatatatagaggagaggaggtacaatattaatcagt 166  Q
    |||||||||||| |||||||| ||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  7181713 tgttagatggaaaagttgtgtgtataaatagagcaatattaatagccagaccaataatatgaaccatatatagaggagaggaggtacagtattaatcagt 7181812  T
Q  167 ccattcatgcatgcaaggaattggtcccttgatagctacgtatagaaccgagacttgatgagttttgagaaaaataactggtggtgttgttt 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7181813 ccattcatgcatgcaaggaattggtcccttgatagctacgtatagaaccgagacttgatgagttttgagaaaaataactggtggtgttgttt 7181904  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 79 - 209
Target Start/End: Original strand, 7193361 - 7193491
Alignment:
Q  79 atggaagagttgtgtttataaatagagcaatagcc----agaccaataatatgaaccatatatagaggagaggaggtacaatattaatcagtccattcat 174  Q
    ||||||||| ||| | |||||||||||||||||||    |||||||||||| |||||| ||||||||||||||| |||| |||||||  |||||| ||||    
T  7193361 atggaagagctgtatgtataaatagagcaatagccagccagaccaataataggaaccacatatagaggagaggaagtacgatattaactagtccactcat 7193460  T
Q  175 gcatgcaaggaattggtcccttgatagctacgtat 209  Q
    ||||    |||| |||||||| |||||||||||||    
T  7193461 gcat----ggaaatggtccctagatagctacgtat 7193491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 7181498 - 7181554
Alignment:
Q  21 taatctgctataggtagaaggaacccttacnnnnnnnngcgtgtacttgagttgtta 77  Q
    ||||||||||||||||||||||||||||||        |||||||||||||||||||    
T  7181498 taatctgctataggtagaaggaacccttacaaaaaaaagcgtgtacttgagttgtta 7181554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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