View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0493_1D_low_18 (Length: 264)
Name: NF0493_1D_low_18
Description: NF0493_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493_1D_low_18 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 138; Significance: 3e-72; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 12 - 189
Target Start/End: Complemental strand, 8772677 - 8772500
Alignment:
| Q |
12 |
atggacatcatggtggtgaatcatcaacttcctgtgttggcctcttagcacaagtcatgaatgttgctggttatggacaacaaccgtcatcgcagtcttg |
111 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
8772677 |
atggacttcatggtggtgaatcatcaacttcctgtgttgggctcttggcacaagtcatgaatgttgctggttatggacaacaacagtcatcgcagtcttg |
8772578 |
T |
|
| Q |
112 |
tttctactctgctcaaactgattgaagctggctgttgatacatttagtttcctattgtcttataatatttggctagct |
189 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||| ||||| ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
8772577 |
tttctactctgctcaaactagttgaatctggctgctgatatatttagtttcctattgtcttataatttttggctagct |
8772500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 191 - 264
Target Start/End: Complemental strand, 25514344 - 25514271
Alignment:
| Q |
191 |
atataacagaacttgctagtgttttgatatctcaaaatcactgtaaaagcaacaaaataggcattgactaatta |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||| ||||||||||| |
|
|
| T |
25514344 |
atataacagaacttgctagtgttttgatatctcaaaataattctaaaagcaacaaaataggctttgactaatta |
25514271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 191 - 264
Target Start/End: Original strand, 25521016 - 25521089
Alignment:
| Q |
191 |
atataacagaacttgctagtgttttgatatctcaaaatcactgtaaaagcaacaaaataggcattgactaatta |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||| ||||||||||| |
|
|
| T |
25521016 |
atataacagaacttgctagtgttttgatatctcaaaataattctaaaagcaacaaaataggctttgactaatta |
25521089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 191 - 264
Target Start/End: Original strand, 42799994 - 42800067
Alignment:
| Q |
191 |
atataacagaacttgctagtgttttgatatctcaaaatcactgtaaaagcaacaaaataggcattgactaatta |
264 |
Q |
| |
|
||||||||||| || |||||||||| |||||||||||||| |||||||||||||| ||| || ||||||||||| |
|
|
| T |
42799994 |
atataacagaaattactagtgttttaatatctcaaaatcattgtaaaagcaacaagataagctttgactaatta |
42800067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 204 - 264
Target Start/End: Original strand, 42803102 - 42803162
Alignment:
| Q |
204 |
tgctagtgttttgatatctcaaaatcactgtaaaagcaacaaaataggcattgactaatta |
264 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| ||||||||| | ||||||||| |
|
|
| T |
42803102 |
tgctagtgttttgatatctcaaaatcattgtaaaagcattaaaataggcttcgactaatta |
42803162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 12 - 189
Target Start/End: Original strand, 7558027 - 7558204
Alignment:
| Q |
12 |
atggacatcatggtggtgaatcatcaacttcctgtgttggcctcttagcacaagtcatgaatgttgctggttatggacaacaaccgtcatcgcagtcttg |
111 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
7558027 |
atggacttcatggtggtgaatcatcaacttcctgtgttgggctcttggcacaagtcatgaatgttgctggttatggacaacaacagtcatcgcagtcttg |
7558126 |
T |
|
| Q |
112 |
tttctactctgctcaaactgattgaagctggctgttgatacatttagtttcctattgtcttataatatttggctagct |
189 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||| ||||| ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
7558127 |
tttctactctgctcaaactagttgaatctggctgctgatatatttagtttcctattgtcttataatttttggctagct |
7558204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 126; Significance: 5e-65; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 12 - 189
Target Start/End: Original strand, 19721754 - 19721931
Alignment:
| Q |
12 |
atggacatcatggtggtgaatcatcaacttcctgtgttggcctcttagcacaagtcatgaatgttgctggttatggacaacaaccgtcatcgcagtcttg |
111 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| ||||| ||| || |||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
19721754 |
atggacttcatggtggtgaatcatcaacttcctgtgttgggctcttggcataaatcatgaatgttgctggttatggacaacaacaatcatcgcagtcttg |
19721853 |
T |
|
| Q |
112 |
tttctactctgctcaaactgattgaagctggctgttgatacatttagtttcctattgtcttataatatttggctagct |
189 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||| ||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
19721854 |
tttctactctgctcaatttgattgaagctggctgctgatatatttattttcctattgtcttataatttttggctagct |
19721931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 191 - 262
Target Start/End: Complemental strand, 7387706 - 7387635
Alignment:
| Q |
191 |
atataacagaacttgctagtgttttgatatctcaaaatcactgtaaaagcaacaaaataggcattgactaat |
262 |
Q |
| |
|
||||| |||||||||||||||| |||||| |||||||||| ||||||||||||||||||||| | ||||||| |
|
|
| T |
7387706 |
atatagcagaacttgctagtgtattgatacctcaaaatcattgtaaaagcaacaaaataggcttcgactaat |
7387635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 124 - 176
Target Start/End: Complemental strand, 35808065 - 35808013
Alignment:
| Q |
124 |
tcaaactgattgaagctggctgttgatacatttagtttcctattgtcttataa |
176 |
Q |
| |
|
||||||||||||||| |||| | ||||| |||||||||||||||||||||||| |
|
|
| T |
35808065 |
tcaaactgattgaagttggcagctgatatatttagtttcctattgtcttataa |
35808013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 191 - 264
Target Start/End: Original strand, 27906858 - 27906931
Alignment:
| Q |
191 |
atataacagaacttgctagtgttttgatatctcaaaatcactgtaaaagcaacaaaataggcattgactaatta |
264 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| | ||||||||| |
|
|
| T |
27906858 |
atataacagaacttgctagtgttttgatacctcaaaatcattgtaaaagcaacaaaataggcttcgactaatta |
27906931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 711 times since January 2019
Visitors: 3489