View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0493_1D_low_19 (Length: 259)

Name: NF0493_1D_low_19
Description: NF0493_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0493_1D_low_19
NF0493_1D_low_19
[»] chr5 (1 HSPs)
chr5 (10-249)||(43410764-43411010)


Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 10 - 249
Target Start/End: Original strand, 43410764 - 43411010
Alignment:
Q  10 atgaacaacttggttctaaaatatttggatgatgaaggagaatgggttgtgttatcatgtgatgctgatcttgaagaatgtaaagacttgcacacatcat 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43410764 atgaacaacttggttctaaaatatttggatgatgaaggagaatgggttgtgttatcatgtgatgctgatcttgaagaatgtaaagacttgcacacatcat 43410863  T
Q  110 ctcacacacgtaccattagactctctctttttcaagcttcccctctcaatcttccaagcactttccgcaacagcagcagcagcagtccatcctc----ct 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    ||    
T  43410864 ctcacacacgtaccattagactctctctttttcaagcttcccctctcaatcttccaaacactttccgcaacagcagcagcagcagtccatcctcctagct 43410963  T
Q  206 agctagcttacaacttc---tcatctgaatgtgttgtgtctgtctgt 249  Q
    |||||||||||||||||   |||||||||||||||||||||||||||    
T  43410964 agctagcttacaacttctgatcatctgaatgtgttgtgtctgtctgt 43411010  T

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