View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0493_1D_low_2 (Length: 654)
Name: NF0493_1D_low_2
Description: NF0493_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493_1D_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 590; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 1 - 651
Target Start/End: Original strand, 48107256 - 48107897
Alignment:
| Q |
1 |
aaaattattcaataaaaacatatttgactcaaagaagaatgcagttaacctcgaaaagaatctcagcagggctcgagaagtttgcgactatgccaccttt |
100 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
48107256 |
aaaaatattcaataaaaacatatttgactcaaagaagaatgcagttaacctcgaaaagaatctcagcagggctcgagaagtttgcaactatgccaccttt |
48107355 |
T |
|
| Q |
101 |
tagaagagaccaacatccatgctttgctatcacatggccaccatgcaccagttgatcacttccatttgttttaaataccacagaaattgtgtcacttcct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48107356 |
tagaagagaccaacatccatgctttgctatcacatggccaccatgcaccagttgatcacttccatttgttttaaataccacagaaattgtgtcacttcct |
48107455 |
T |
|
| Q |
201 |
tcactcagctgaagccaagctgaatgtggaaataaaatcaatcaaaatatgttttataaaacaaatgaattaacgatcaatatgataatttacattcatt |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48107456 |
tcactcagctgaagccaagctgaatgtggaaataaaatcaatcaaaatatgttttataaaacaaatgaattaacgatcaatatgataatttacattcatt |
48107555 |
T |
|
| Q |
301 |
tgatgaatgttagtgactgagagagaaacataagttagttacctgaaaaagtgtatatcaatcctttctctagctgaaccgtttgtgaaaaactatctaa |
400 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48107556 |
tgatgaatgttagtgact----gagaaacataagttagttacctgaaaaagtatatatcaatcctttctctagctgaaccgtttgtgaaaaactatctaa |
48107651 |
T |
|
| Q |
401 |
tgattgtgttcttttgctggcaacaatgaatctatttccatcatttgatatacgttcctcaattgttccatttccaaatactgtccaaccctctatgttg |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48107652 |
tgattgtgttcttttgctggcaacaatgaatctatttccatcatttgatatacgttcctcaattgttccatttccaaatactgtccaaccctctatgttg |
48107751 |
T |
|
| Q |
501 |
tgatcaaatccggaatttattataattccccctccatattgtgctctttgaggttctttcatacactgttttatttcaaggcattgacaacacaagaaag |
600 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
48107752 |
tgatcaaatccggaatttactataattccccctccatattgtgctctttgaggttctttcatacactgttttattccaaggcattgacaacacaagaaaa |
48107851 |
T |
|
| Q |
601 |
tttatgcaatataatgtttaagaattaataatcatattaaaagatgtgtca |
651 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
48107852 |
tttatgc-----aatgtttaagaattaataatcatattaaaagatgtgtca |
48107897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 337 - 584
Target Start/End: Original strand, 48063919 - 48064166
Alignment:
| Q |
337 |
agttacctgaaaaagtgtatatcaatcctttctctagctgaaccgtttgtgaaaaactatctaatgattgtgttcttttgctggcaacaatgaatctatt |
436 |
Q |
| |
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||||||| ||||| ||||||||| |||||||| || || ||| | ||||| |||| ||| |||| |||| |||| ||||| ||||||||||||||||| |
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| T |
48063919 |
agttaccagaaaacatgtatatcattcctttcttcagttggaccttctgtgagaaaccatccaatgtttgtcttctgttgctagcaacaatgaatctatt |
48064018 |
T |
|
| Q |
437 |
tccatcatttgatatacgttcctcaattgttccatttccaaatactgtccaaccctctatgttgtgatcaaatccggaatttattataattccccctcca |
536 |
Q |
| |
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| ||||||||||||| |||||||| ||||||||||||||||| ||| ||||||||| |||||||||||||||||| | ||||| |||||| || |||||| |
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| T |
48064019 |
ttcatcatttgatattcgttcctcgattgttccatttccaaacactctccaaccctttatgttgtgatcaaatcctggatttactataatgcctcctcca |
48064118 |
T |
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| Q |
537 |
tattgtgctctttgaggttctttcatacactgttttatttcaaggcat |
584 |
Q |
| |
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|||||||| || | ||||||| ||| |||||| ||||||||||||||| |
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| T |
48064119 |
tattgtgccctcttaggttctgtcacacactgctttatttcaaggcat |
48064166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 338 - 610
Target Start/End: Original strand, 48101173 - 48101445
Alignment:
| Q |
338 |
gttacctgaaaaagtgtatatcaatcctttctctagctgaaccgtttgtgaaaaactatctaatgattgtgttcttttgctggcaacaatgaatctattt |
437 |
Q |
| |
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|||||| |||||||| ||||||| |||||||| || || ||| | |||||||||||||| |||| ||||||||| |||||||||||||||||||||||| |
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| T |
48101173 |
gttaccagaaaaagtatatatcattcctttcttcagttggaccttctgtgaaaaactatccaatggttgtgttctgttgctggcaacaatgaatctattt |
48101272 |
T |
|
| Q |
438 |
ccatcatttgatatacgttcctcaattgttccatttccaaatactgtccaaccctctatgttgtgatcaaatccggaatttattataattccccctccat |
537 |
Q |
| |
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|| | ||||||| |||||||| ||||||||||||||||| ||| |||| || | |||||||||||||||||| | ||||| | |||| || || |||| |
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| T |
48101273 |
ccgttgtttgatactcgttcctcgattgttccatttccaaacactttccagccatttatgttgtgatcaaatcctggatttactgtaatgcctcccccat |
48101372 |
T |
|
| Q |
538 |
attgtgctctttgaggttctttcatacactgttttatttcaaggcattgacaacacaagaaagtttatgcaat |
610 |
Q |
| |
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||||||| || | ||||||| ||| |||||| ||| ||| |||||||| ||||||||| |||||| |||||| |
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| T |
48101373 |
attgtgccctcttaggttctgtcacacactgctttgtttataggcattggcaacacaagtaagtttgtgcaat |
48101445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 45 - 225
Target Start/End: Original strand, 48068321 - 48068498
Alignment:
| Q |
45 |
ttaacctcgaaaagaatctcagcagggctcgagaagtttgcgactatgccaccttttagaagagaccaacatccatgctttgctatcacatggccaccat |
144 |
Q |
| |
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|||||||| ||||| || ||||||||||| || || ||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||| | |
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| T |
48068321 |
ttaacctcaaaaaggatttcagcagggcttgaaaattttgcaactatgcctccttttagaagagaccaacatccatattttgctatcacatggccacctt |
48068420 |
T |
|
| Q |
145 |
gcaccagttgatcacttccatttgttttaaataccacagaaattgtgtcacttccttcactcagctgaagccaagctgaat |
225 |
Q |
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| T |
48068421 |
ttaccaat---tcacttccatttattttaaataccacagaaattgtgtcacttccttcactcagctggaaccaagctgaat |
48068498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 48 - 225
Target Start/End: Original strand, 48063660 - 48063834
Alignment:
| Q |
48 |
acctcgaaaagaatctcagcagggctcgagaagtttgcgactatgccaccttttagaagagaccaacatccatgctttgctatcacatggccaccatgca |
147 |
Q |
| |
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||||| |||||||||||||||||||| || |||||||| ||||| || |||||||| || |||||||||||||| || |||||||||||||||||||||| |
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| T |
48063660 |
acctcaaaaagaatctcagcagggcttgaaaagtttgcaactataccgccttttagcagcgaccaacatccatgtttggctatcacatggccaccatgca |
48063759 |
T |
|
| Q |
148 |
ccagttgatcacttccatttgttttaaataccacagaaattgtgtcacttccttcactcagctgaagccaagctgaat |
225 |
Q |
| |
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||||| |||||||||||| |||||||||| || || | |||||||||||||||| ||||||| ||||||||||| |
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| T |
48063760 |
ccagt---tcacttccatttcttttaaatacaactgacacaatgtcacttccttcactgagctgaaaccaagctgaat |
48063834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 338 - 580
Target Start/End: Original strand, 48068576 - 48068818
Alignment:
| Q |
338 |
gttacctgaaaaagtgtatatcaatcctttctctagctgaaccgtttgtgaaaaactatctaatgattgtgttcttttgctggcaacaatgaatctattt |
437 |
Q |
| |
|
|||||| |||||| | ||||||| | ||||||| || || || ||||||| ||||||||||||| ||||||||| |||||| ||||||| ||| ||||| |
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|
| T |
48068576 |
gttaccagaaaaaatatatatcatttctttctccagttggactttttgtgataaactatctaatggttgtgttctgttgctgacaacaataaatgtattt |
48068675 |
T |
|
| Q |
438 |
ccatcatttgatatacgttcctcaattgttccatttccaaatactgtccaaccctctatgttgtgatcaaatccggaatttattataattccccctccat |
537 |
Q |
| |
|
|||||||||||| | ||||||| |||||||||| |||| || |||||| ||| ||||||||||||||||| | ||||| |||||| || ||||||| |
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| T |
48068676 |
ccatcatttgatgttcgttccttgattgttccatgctcaaacaccgtccaatccttaatgttgtgatcaaatcctggatttactataatgccacctccat |
48068775 |
T |
|
| Q |
538 |
attgtgctctttgaggttctttcatacactgttttatttcaag |
580 |
Q |
| |
|
|||||||||| ||||||||| | |||||| ||||||||||| |
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|
| T |
48068776 |
attgtgctctctgaggttctgggacacactggtttatttcaag |
48068818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 48 - 232
Target Start/End: Original strand, 48100903 - 48101084
Alignment:
| Q |
48 |
acctcgaaaagaatctcagcagggctcgagaagtttgcgactatgccaccttttagaagagaccaacatccatgctttgctatcacatggccaccatgca |
147 |
Q |
| |
|
||||| |||||||||||||||||||| || ||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| | | |
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| T |
48100903 |
acctcaaaaagaatctcagcagggcttgaaaagttggcaactatgccaccttttagaagagaccagcatccatgctttgctatcacatgaccacctcgta |
48101002 |
T |
|
| Q |
148 |
ccagttgatcacttccatttgttttaaataccacagaaattgtgtcacttccttcactcagctgaagccaagctgaatgtggaaa |
232 |
Q |
| |
|
| | | |||||||||||| |||||||||| || || | |||||||||||||||| ||||| |||||||||||||||||| |
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|
| T |
48101003 |
caaat---tcacttccatttattttaaatacaactgatacaaactcacttccttcactcaactgaaaccaagctgaatgtggaaa |
48101084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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