View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0493_1D_low_22 (Length: 254)
Name: NF0493_1D_low_22
Description: NF0493_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493_1D_low_22 |
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| [»] scaffold0361 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 4947186 - 4947429
Alignment:
| Q |
1 |
ttgtccccttagccgcctttggttccggaattgtagtctcattttcagaatcgactaaaccagaagaaacacaatccgttaatgagcacagaatcaataa |
100 |
Q |
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| T |
4947186 |
ttgtctccttagccacctttggttccggaattgtagtctcattttcagaatcgactaaaccagaagaaacacaatccgttaatgagcacagaatcaataa |
4947285 |
T |
|
| Q |
101 |
atnnnnnnntccttggttaaaaatttcaacaagaacgtgaattggcaggcagaacataagatataatggaatgcatgaaaaatctgatggcaaagtaaca |
200 |
Q |
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| T |
4947286 |
ataaaaaaatcattggttaaaaatttcaacaagaacgtgaattggcaggcagaacataagatataatggaatgcatgaaaaataaaatggcaaagtaaca |
4947385 |
T |
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| Q |
201 |
atagtatcatttccttgcttgcccacagtttgcaaatagcaaca |
244 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4947386 |
atagcatcatttccttgcttgcccacagtttgcaaatagcaaca |
4947429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0361 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: scaffold0361
Description:
Target: scaffold0361; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 11859 - 12098
Alignment:
| Q |
1 |
ttgtccccttagccgcctttggttccggaattgtagtctcattttcagaatcgactaaaccagaagaaacacaatccgttaatgagcacagaatcaataa |
100 |
Q |
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||||| ||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||| ||| | |||||||||| |
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| T |
11859 |
ttgtctccttagctgcctttggttccggaattgtagtctcgttttcagaatcaactaaaccagaaaaaacacaatccgttaattagcgcggaatcaataa |
11958 |
T |
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| Q |
101 |
atnnnnnnn-tccttggttaaaaatttcaacaagaacgtgaattggcaggcagaacataagatataatggaatgcatgaaaaatctgatggcaaagtaac |
199 |
Q |
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| T |
11959 |
ataaataaaatccttggttaaaaatttcaacaaaaacttgtattgtcaggcagaacatacgatataatggaatgcatgaaaaatcagatggcaaagtaac |
12058 |
T |
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| Q |
200 |
aatagtatcatttccttgcttgcccacagtttgcaaatagc |
240 |
Q |
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| T |
12059 |
actagt-tcatttccttgcttgcccacagtttgcaaatagc |
12098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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