View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0493_1D_low_23 (Length: 254)

Name: NF0493_1D_low_23
Description: NF0493_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0493_1D_low_23
NF0493_1D_low_23
[»] chr7 (1 HSPs)
chr7 (1-235)||(1249338-1249570)
[»] chr3 (2 HSPs)
chr3 (176-235)||(14959178-14959237)
chr3 (176-235)||(39491083-39491142)
[»] scaffold0198 (1 HSPs)
scaffold0198 (176-235)||(18421-18480)
[»] chr2 (2 HSPs)
chr2 (176-235)||(27585535-27585594)
chr2 (176-235)||(2224047-2224106)
[»] chr4 (1 HSPs)
chr4 (174-223)||(35181763-35181812)


Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 1249338 - 1249570
Alignment:
Q  1 tcatgtattattgtgctcttgtttatgcatggagttaagagaaatgcaatctaattataattagtatggatagtctacatgttttaagtacgttctcatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  1249338 tcatgtattattgtgctcttgtttatgcatggagttaagagaaatgcaatctaattataattagtatggatagtcta--tgttttaagtacgttctcatc 1249435  T
Q  101 ttcttaagtattattacatgcgtgaatgaaactgcttgatcagtccataaccaatagcaattattatttcagaactgctatatatcacgattaaatactt 200  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  1249436 ttcttaagtattattacatgcgtgaatgaaacttcttgatcagtccataaccaatagcatttattatttcagaactgctatatatcacgattaaatactt 1249535  T
Q  201 cacgaataaatcatgaatcacatgtattccatagt 235  Q
     |||||||||||||||||||||| |||||||||||    
T  1249536 tacgaataaatcatgaatcacatatattccatagt 1249570  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 176 - 235
Target Start/End: Original strand, 14959178 - 14959237
Alignment:
Q  176 tgctatatatcacgattaaatacttcacgaataaatcatgaatcacatgtattccatagt 235  Q
    ||||||||| ||||||||||||||||| |||||||||| ||||||||| |||||||||||    
T  14959178 tgctatataccacgattaaatacttcaagaataaatcacgaatcacatatattccatagt 14959237  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 176 - 235
Target Start/End: Original strand, 39491083 - 39491142
Alignment:
Q  176 tgctatatatcacgattaaatacttcacgaataaatcatgaatcacatgtattccatagt 235  Q
    ||||||||| ||||||||||||||||| |||||||||| ||||||||| |||||||||||    
T  39491083 tgctatataccacgattaaatacttcaagaataaatcacgaatcacatatattccatagt 39491142  T

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Target: scaffold0198 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 176 - 235
Target Start/End: Original strand, 18421 - 18480
Alignment:
Q  176 tgctatatatcacgattaaatacttcacgaataaatcatgaatcacatgtattccatagt 235  Q
    ||||||||| ||||||||||||||||| |||||||||| ||||||||| |||| ||||||    
T  18421 tgctatataccacgattaaatacttcaagaataaatcacgaatcacatatatttcatagt 18480  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 176 - 235
Target Start/End: Complemental strand, 27585594 - 27585535
Alignment:
Q  176 tgctatatatcacgattaaatacttcacgaataaatcatgaatcacatgtattccatagt 235  Q
    ||||||||| ||| ||||||||||||| |||||||||| ||||||||| |||||||||||    
T  27585594 tgctatataccacaattaaatacttcaagaataaatcacgaatcacatatattccatagt 27585535  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 235
Target Start/End: Original strand, 2224047 - 2224106
Alignment:
Q  176 tgctatatatcacgattaaatacttcacgaataaatcatgaatcacatgtattccatagt 235  Q
    ||||||||| |||||||||||| |||| |||||||||| ||||||||| |||| ||||||    
T  2224047 tgctatataccacgattaaatatttcaagaataaatcacgaatcacatatatttcatagt 2224106  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 35181763 - 35181812
Alignment:
Q  174 actgctatatatcacgattaaatacttcacgaataaatcatgaatcacat 223  Q
    |||||||||||||||||||||| |||| | |||||||||| |||| ||||    
T  35181763 actgctatatatcacgattaaaaactttaagaataaatcacgaattacat 35181812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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