View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0493_1D_low_25 (Length: 248)
Name: NF0493_1D_low_25
Description: NF0493_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493_1D_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 12 - 247
Target Start/End: Original strand, 9804036 - 9804281
Alignment:
| Q |
12 |
cttatcaccatgaattttgcttacacatt----------cttgagacggagcctacttgctttcttcctccttataaaatcagaaatttcctcattgttt |
101 |
Q |
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| T |
9804036 |
cttatcaccatgaattttgcttacacatttcatttgagccttgagacggagcctacttgctttcttcctccttataaaatcagaaatttcctcattgttt |
9804135 |
T |
|
| Q |
102 |
tgatcataattggagtaaaagttcttcccctttctgctgcagaacttgttggcagagaaatacctccactaccttgcattttagatacatcctgcaaata |
201 |
Q |
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||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
9804136 |
tgatcataattggagtaaaagttcttcgcttttctgctgcagaacttgttggcagagaaatacctccactaccttgcatttcagatacatcctgcaaata |
9804235 |
T |
|
| Q |
202 |
agaatccttgctacttgaactaaagacgacacatatagtttctttt |
247 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9804236 |
agaatccttgctacttgaactaaagacgacacatatagtttctttt |
9804281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 41 - 215
Target Start/End: Original strand, 9813828 - 9814003
Alignment:
| Q |
41 |
cttgagacggagcctacttgctttcttcctccttataaaatcagaaatttcctcattgttttgatcataattggagtaaaagttcttccccttt-ctgct |
139 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||| |||| |||||| ||||||| |||||||||||||| ||||| |||||| ||||| |
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| T |
9813828 |
cttgagacggagcctactcactttcttcctccttataaaatcagatttttcgtcattgatttgatcctaattggagtaaaaattctttcccttttctgct |
9813927 |
T |
|
| Q |
140 |
gcagaacttgttggcagagaaatacctccactaccttgcattttagatacatcctgcaaataagaatccttgctac |
215 |
Q |
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| T |
9813928 |
gcagaatttgttgacagagaaatacttccactaccttgcatatcagatacatcttgcaaataagaatccttgctac |
9814003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 77 - 216
Target Start/End: Original strand, 9829154 - 9829294
Alignment:
| Q |
77 |
aaaatcagaaatttcctcattgttttgatcataattggagtaaaagttcttccccttt-ctgctgcagaacttgttggcagagaaatacctccactacct |
175 |
Q |
| |
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|||||||||| |||||| ||| ||||||||||||||||||| || ||||| |||||| |||||||||||| |||| ||||||| ||| | ||||||| |
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| T |
9829154 |
aaaatcagaatcttcctcgttgctttgatcataattggagtacaaattctttcccttttctgctgcagaacacgttgacagagaattacattgactacct |
9829253 |
T |
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| Q |
176 |
tgcattttagatacatcctgcaaataagaatccttgctact |
216 |
Q |
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||||| | ||||||||| || |||| ||||| |||| |||| |
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| T |
9829254 |
tgcatatcagatacatcttgaaaattagaattcttgttact |
9829294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 77 - 204
Target Start/End: Original strand, 9755702 - 9755830
Alignment:
| Q |
77 |
aaaatcagaaatttcctcattgttttgatcataattggagtaaaagttc-ttcccctttctgctgcagaacttgttggcagagaaatacctccactacct |
175 |
Q |
| |
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|||||||||| ||||||| || ||||||||||||||||||| || ||| ||||| ||| || |||||||| ||||| | |||||||| | |||| ||| |
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| T |
9755702 |
aaaatcagaatcttcctcactgctttgatcataattggagtacaaattctttcccttttttgttgcagaacatgttgactgagaaatatattcactgcct |
9755801 |
T |
|
| Q |
176 |
tgcattttagatacatcctgcaaataaga |
204 |
Q |
| |
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||||| | ||| ||||| || |||||||| |
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| T |
9755802 |
tgcatatcagacacatcttgaaaataaga |
9755830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 211
Target Start/End: Original strand, 9708295 - 9708429
Alignment:
| Q |
78 |
aaatcagaaatttcctcattgttttgatcataattggagtaaaagttct-tcccctttctgctgcagaacttgttggcagagaaatacctccactacctt |
176 |
Q |
| |
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||||||||| |||||||| | |||||| |||||||||| | | ||| | ||||||||||||| ||| || ||||| |||||||||| ||||||||| | |
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| T |
9708295 |
aaatcagaattttcctcactcttttgagcataattggacttagagtcttctcccctttctgctacagtacatgttgacagagaaatatttccactaccct |
9708394 |
T |
|
| Q |
177 |
gcattttagatacatcctgcaaataagaatccttg |
211 |
Q |
| |
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|| | | |||| |||| |||| ||||| ||||||| |
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| T |
9708395 |
gcctgtcagatgcatcttgcacataagtatccttg |
9708429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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