View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0493_1D_low_3 (Length: 599)
Name: NF0493_1D_low_3
Description: NF0493_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493_1D_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 1 - 591
Target Start/End: Original strand, 36443397 - 36443990
Alignment:
| Q |
1 |
aaaccctaattaagtcttaattttcatgtcaaattatgattgatcaaattacaatggtgaaattataatataggacatgagtattattgttagatgctag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
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| T |
36443397 |
aaaccctaattaagtcttaattttcatgtcaaattatgattgatcaaattacaatggtgaaattataatataggacatgagcattattgttagatgttag |
36443496 |
T |
|
| Q |
101 |
tgaaattttagataaccctaaatcgaacaataattaatagagttgacttacttttcaacgtaattttagattacaactctctttcccnnnnnnnnnnnng |
200 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||| | |
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| T |
36443497 |
tgaaattttagataatcctaaatcgaacaataattaatagagttgacttaattttcaacctaattttagattacaacttcctttcc-ttttttttttttg |
36443595 |
T |
|
| Q |
201 |
ggtcaaataactttagtgaacaagtaagatatcggaaccctaaaacctctgtatatattatgtaatgtctctaccgaataagcaaatacaagtctctttc |
300 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
36443596 |
ggtcaaataactttagcgaacaagtaagatatcggaaccctaaaacctctgtatatattatgtaatgtctctaccgaataagcaaatacaactctctttc |
36443695 |
T |
|
| Q |
301 |
ccttgaaaacaagaggattaataccaaaaaggatgttaaaactttatatatgactatatttttcttacctgtgtaatatttcaattatctacta---nnn |
397 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36443696 |
ccttgaaaacaagaggattaataccaaaaaggatgttaaaaccttatatatgactatatttttcttacctgtgtaatatttcaattatctactatttttt |
36443795 |
T |
|
| Q |
398 |
nnnnnattacttctctattttcctatatggtatagacagaatatattacttactgaagaatctaaaaaacgaataggtgagtacaattaat-nnnnnnnn |
496 |
Q |
| |
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| T |
36443796 |
tttttattacttctctattttcctatatggtatagacagaatatattactgactgaagaatctaaaaaacgaataggtgagtacaattaataaaaaaaaa |
36443895 |
T |
|
| Q |
497 |
tactcagttaataataatgcaagtttatcgtgaacaatgtgcgcatgttcttattatggttaactaatactattttttactgatgtccatctcat |
591 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
36443896 |
tactcagttaataataatgcaagtttatcgtgaacaatgtgcgcatgttcttattatggttaactaatactattttttactcatgtcaatctcat |
36443990 |
T |
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