View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0493_1D_low_33 (Length: 232)

Name: NF0493_1D_low_33
Description: NF0493_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0493_1D_low_33
NF0493_1D_low_33
[»] chr6 (14 HSPs)
chr6 (1-204)||(33272610-33272813)
chr6 (2-194)||(33388853-33389045)
chr6 (5-181)||(33286360-33286536)
chr6 (5-195)||(33401435-33401625)
chr6 (5-195)||(33263452-33263642)
chr6 (4-182)||(9167580-9167752)
chr6 (6-179)||(33305299-33305472)
chr6 (4-181)||(33643701-33643878)
chr6 (5-89)||(31561997-31562081)
chr6 (4-180)||(33359529-33359699)
chr6 (4-89)||(33058377-33058462)
chr6 (137-182)||(33410916-33410961)
chr6 (137-195)||(33058513-33058571)
chr6 (136-173)||(31561898-31561935)
[»] chr2 (2 HSPs)
chr2 (9-89)||(17440011-17440091)
chr2 (137-194)||(17439903-17439960)
[»] chr4 (4 HSPs)
chr4 (4-88)||(31149173-31149257)
chr4 (26-101)||(31033075-31033150)
chr4 (55-100)||(31018642-31018687)
chr4 (8-88)||(31158051-31158131)
[»] scaffold1408 (1 HSPs)
scaffold1408 (9-89)||(1447-1527)
[»] scaffold0428 (1 HSPs)
scaffold0428 (9-89)||(7193-7273)


Alignment Details
Target: chr6 (Bit Score: 164; Significance: 8e-88; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 33272610 - 33272813
Alignment:
Q  1 tcatcaagatcaattctacaaggtcattggggtgaaaacttgttggcaggcacttgaaaggatatctattccactcaacatatcttaatgcatttgaaag 100  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||| || ||||||||||||||||||||||||||||||    
T  33272610 tcatcaagatcaattctataaggtcattggggtgaaaacttgttggtagacacttgaaaggatatccatcccactcaacatatcttaatgcatttgaaag 33272709  T
Q  101 actcgatagactacctgggatattccgaccccacttgatgatgagcaatctaagattactcatttttgccaagtgttcaacgaccacctcttcataacac 200  Q
     ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |    
T  33272710 gctcgatagactacctgggatattccgaccgcacttgattatgagcaatctaagattactcatttttgccaagtgttcaacgaccacttcttcataactc 33272809  T
Q  201 caaa 204  Q
    ||||    
T  33272810 caaa 33272813  T

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Target: chr6; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 2 - 194
Target Start/End: Original strand, 33388853 - 33389045
Alignment:
Q  2 catcaagatcaattctacaaggtcattggggtgaaaacttgttggcaggcacttgaaaggatatctattccactcaacatatcttaatgcatttgaaaga 101  Q
    |||||||||||| |||||||| ||| ||||||||||||||| |||||   |||||||||||||   |||||||||||||||||||||||  |||||||||    
T  33388853 catcaagatcaactctacaagatcactggggtgaaaacttgatggcaaatacttgaaaggataataattccactcaacatatcttaatgtgtttgaaaga 33388952  T
Q  102 ctcgatagactacctgggatattccgaccccacttgatgatgagcaatctaagattactcatttttgccaagtgttcaacgaccacctcttca 194  Q
    |||||| | |||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||| |||||||||||    
T  33388953 ctcgatgggctacttgggatattcggaccccacttgatgatgagtaatctaagattactcatttttgacaactgttcaacgtccacctcttca 33389045  T

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Target: chr6; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 5 - 181
Target Start/End: Original strand, 33286360 - 33286536
Alignment:
Q  5 caagatcaattctacaaggtcattggggtgaaaacttgttggcaggcacttgaaaggatatctattccactcaacatatcttaatgcatttgaaagactc 104  Q
    |||||||||||||||||| ||||||||||||||| ||| |||||   | ||||||||||||| | |||||| |||||||||||||   ||||||||||||    
T  33286360 caagatcaattctacaagttcattggggtgaaaatttgatggcaaatatttgaaaggatatccagtccactgaacatatcttaatttgtttgaaagactc 33286459  T
Q  105 gatagactacctgggatattccgaccccacttgatgatgagcaatctaagattactcatttttgccaagtgttcaac 181  Q
     |||| || || | |||||||  ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  33286460 aataggcttccggagatattcacaccccacatgatgatgagcaatctaagattactcatttttgacaagtgttcaac 33286536  T

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Target: chr6; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 5 - 195
Target Start/End: Original strand, 33401435 - 33401625
Alignment:
Q  5 caagatcaattctacaaggtcattggggtgaaaacttgttggcaggcacttgaaaggatatctattccactcaacatatcttaatgcatttgaaagactc 104  Q
    |||||||||||||||||| |||||||||||||||||||||||||   ||||||||||||||  || ||| ||||||||||||||| | |||||||||       
T  33401435 caagatcaattctacaagttcattggggtgaaaacttgttggcaaatacttgaaaggatattcatgccaatcaacatatcttaattcgtttgaaagaaaa 33401534  T
Q  105 gat-agactacctgggatattccgaccccacttgatgatgagcaatctaagattactcatttttgccaagtgttcaacgaccacctcttcat 195  Q
      | || || |||| |||||||| |   |||||||||||||| | ||||||||||||||||||||  |||||||||||  ||||||||||||    
T  33401535 tttgagcct-cctgagatattccaattgcacttgatgatgagaagtctaagattactcatttttgataagtgttcaacatccacctcttcat 33401625  T

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Target: chr6; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 195
Target Start/End: Original strand, 33263452 - 33263642
Alignment:
Q  5 caagatcaattctacaaggtcattggggtgaaaacttgttggcaggcacttgaaaggatatctattccactcaacatatcttaatgcatttgaaagactc 104  Q
    |||||||||||||||||| ||||||||||||||||||| |||||   ||||  ||||||||  || ||||||||||||||| |||   ||||||||||      
T  33263452 caagatcaattctacaagttcattggggtgaaaacttgatggcaaatactttgaaggatattcatcccactcaacatatctcaatttgtttgaaagacaa 33263551  T
Q  105 gatagactacctgggatattccgaccccacttgatgatgagcaatctaagattactcatttttgccaagtgttcaacgaccacctcttcat 195  Q
      | | || |||| ||||| |   ||  || ||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||    
T  33263552 cttgggcttcctgagatatacattccgtacctgatgatgagcaatctaagattactcatttttgacaattgttcaacgtccacctcttcat 33263642  T

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Target: chr6; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 182
Target Start/End: Original strand, 9167580 - 9167752
Alignment:
Q  4 tcaagatcaattctacaaggtcattggggtgaaaacttgttggcaggcacttgaaaggatatctattccactcaacatatcttaatgcatttgaaagact 103  Q
    ||||||||| || |||||| ||||||| ||||||||| | |||||   ||||||||||||||| || |||||||| |||||||||| | || ||||||||    
T  9167580 tcaagatcagttgtacaagttcattggcgtgaaaactcgatggcaaatacttgaaaggatatcgataccactcaagatatcttaattcgttcgaaagact 9167679  T
Q  104 cgatagactacctgggatattccgaccccacttgatgatgagcaatctaagattactcatttttgccaagtgttcaacg 182  Q
      || |      |  |||||||| |||  | ||||||||||||||||||||| |||||||||||| |||||||||||||    
T  9167680 acatgg------taagatattccaaccgtatttgatgatgagcaatctaagactactcatttttgacaagtgttcaacg 9167752  T

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Target: chr6; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 6 - 179
Target Start/End: Original strand, 33305299 - 33305472
Alignment:
Q  6 aagatcaattctacaaggtcattggggtgaaaacttgttggcaggcacttgaaaggatatctattccactcaacatatcttaatgcatttgaaagactcg 105  Q
    ||||||||||||||||| ||||||||||||||| ||| |||||   |||| |||||||||  || ||| ||||||||| |||||   ||||||| ||||     
T  33305299 aagatcaattctacaagttcattggggtgaaaatttgatggcaaatacttaaaaggatattcatgccaatcaacatattttaatttgtttgaaaaactcc 33305398  T
Q  106 atagactacctgggatattccgaccccacttgatgatgagcaatctaagattactcatttttgccaagtgttca 179  Q
    || |||| |||| |||   || |||  |||||| |||||| |||||||||||| ||||||||| || |||||||    
T  33305399 atggacttcctgagatgcacccaccgtacttgaagatgaggaatctaagattattcatttttgacacgtgttca 33305472  T

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Target: chr6; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 4 - 181
Target Start/End: Complemental strand, 33643878 - 33643701
Alignment:
Q  4 tcaagatcaattctacaaggtcattggggtgaaaacttgttggcaggcacttgaaaggatatctattccactcaacatatcttaatgcatttgaaagact 103  Q
    |||||| |||||||||||| | |||||| |||||| ||| |||||  ||| ||||||||||  ||| ||| ||||||||||||||| | ||||||||||     
T  33643878 tcaagaacaattctacaagttgattgggctgaaaatttgatggcaaacacatgaaaggatacatatgccagtcaacatatcttaattcctttgaaagaca 33643779  T
Q  104 cgatagactacctgggatattccgaccccacttgatgatgagcaatctaagattactcatttttgccaagtgttcaac 181  Q
       | | ||  ||  ||||| || ||| ||||| ||||| ||||||||||||||||||||||||| ||||| ||||||    
T  33643778 acttgggctttctaagatatgccaaccgcactttatgatcagcaatctaagattactcatttttgacaagtattcaac 33643701  T

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Target: chr6; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 5 - 89
Target Start/End: Complemental strand, 31562081 - 31561997
Alignment:
Q  5 caagatcaattctacaaggtcattggggtgaaaacttgttggcaggcacttgaaaggatatctattccactcaacatatcttaat 89  Q
    |||||||||||||||||| |||| |||||||||||||| |||||   ||||||||||||||  |  |||||||||||||||||||    
T  31562081 caagatcaattctacaagttcataggggtgaaaacttgatggcaaatacttgaaaggatattcaagccactcaacatatcttaat 31561997  T

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Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 180
Target Start/End: Original strand, 33359529 - 33359699
Alignment:
Q  4 tcaagatcaattctacaaggtcattggggtgaaaacttgttggcaggcacttgaaaggatatctattccactcaacatatcttaatgcatttgaaagact 103  Q
    ||||||||||||||||||| ||||||| || ||||||||||||||   ||| | ||||||||   | ||||| || | |||||||||| |||||||||||    
T  33359529 tcaagatcaattctacaagttcattggagttaaaacttgttggcaaatactggcaaggatatgcctcccactgaataaatcttaatgcgtttgaaagact 33359628  T
Q  104 cgatagactacctgggatattccgaccccacttgatgatgagcaatctaagattactcatttttgccaagtgttcaa 180  Q
    || | | || | || |||||    |      ||||||||||||| |||||||||||||||||||| |||||||||||    
T  33359629 cgttgggcttcttgagatatatgca------ttgatgatgagcactctaagattactcatttttgacaagtgttcaa 33359699  T

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Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 89
Target Start/End: Original strand, 33058377 - 33058462
Alignment:
Q  4 tcaagatcaattctacaaggtcattggggtgaaaacttgttggcaggcacttgaaaggatatctattccactcaacatatcttaat 89  Q
    ||||||||||||||||||| ||||||||||||||| ||| |||||   ||||| |||||||||||  ||| | |||| ||||||||    
T  33058377 tcaagatcaattctacaagttcattggggtgaaaatttgatggcaaatacttggaaggatatctaaaccagtgaacaaatcttaat 33058462  T

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Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 33410916 - 33410961
Alignment:
Q  137 gatgatgagcaatctaagattactcatttttgccaagtgttcaacg 182  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||    
T  33410916 gatgatgagcaatctaagattactcatttttgaaaagtgttcaacg 33410961  T

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Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 137 - 195
Target Start/End: Original strand, 33058513 - 33058571
Alignment:
Q  137 gatgatgagcaatctaagattactcatttttgccaagtgttcaacgaccacctcttcat 195  Q
    ||||| ||||||||| |||||||||||||||| ||||||||||| | || |||||||||    
T  33058513 gatgaagagcaatctgagattactcatttttgacaagtgttcaaagtccgcctcttcat 33058571  T

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Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 173
Target Start/End: Complemental strand, 31561935 - 31561898
Alignment:
Q  136 tgatgatgagcaatctaagattactcatttttgccaag 173  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  31561935 tgatgatgagcaatctaagattactcatttttgacaag 31561898  T

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Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 17440091 - 17440011
Alignment:
Q  9 atcaattctacaaggtcattggggtgaaaacttgttggcaggcacttgaaaggatatctattccactcaacatatcttaat 89  Q
    ||||||||||| || |||||||||||||||||||||||||   |||||||||||||| ||  |||||||||||||||||||    
T  17440091 atcaattctactagttcattggggtgaaaacttgttggcaaatacttgaaaggatatttaggccactcaacatatcttaat 17440011  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 137 - 194
Target Start/End: Complemental strand, 17439960 - 17439903
Alignment:
Q  137 gatgatgagcaatctaagattactcatttttgccaagtgttcaacgaccacctcttca 194  Q
    |||||||||||||||||||||||||||||||| ||| |||||| || |||||||||||    
T  17439960 gatgatgagcaatctaagattactcatttttgacaaatgttcagcgtccacctcttca 17439903  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 88
Target Start/End: Original strand, 31149173 - 31149257
Alignment:
Q  4 tcaagatcaattctacaaggtcattggggtgaaaacttgttggcaggcacttgaaaggatatctattccactcaacatatcttaa 88  Q
    ||||||||||||| ||||| | ||| ||  ||||||||| |||||   ||||||||||||||||||||||||| |||||||||||    
T  31149173 tcaagatcaattcgacaagttgattaggcagaaaacttgatggcaaatacttgaaaggatatctattccactcgacatatcttaa 31149257  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 101
Target Start/End: Original strand, 31033075 - 31033150
Alignment:
Q  26 attggggtgaaaacttgttggcaggcacttgaaaggatatctattccactcaacatatcttaatgcatttgaaaga 101  Q
    |||||||||||||||||| ||||   || |||||||||||  | |||||||||||||||| ||| ||||| |||||    
T  31033075 attggggtgaaaacttgtaggcaaatacatgaaaggatattcagtccactcaacatatctcaattcatttcaaaga 31033150  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 100
Target Start/End: Original strand, 31018642 - 31018687
Alignment:
Q  55 tgaaaggatatctattccactcaacatatcttaatgcatttgaaag 100  Q
    ||||||||||||| ||||| ||||||||||| ||| ||||||||||    
T  31018642 tgaaaggatatctgttccattcaacatatctcaattcatttgaaag 31018687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 31158051 - 31158131
Alignment:
Q  8 gatcaattctacaaggtcattggggtgaaaacttgttggcaggcacttgaaaggatatctattccactcaacatatcttaa 88  Q
    ||||||||| ||||| | |||||| ||||||| || |||||   |||||||||||||||||  |||||| || ||||||||    
T  31158051 gatcaattcaacaagttgattgggctgaaaacatgctggcaaatacttgaaaggatatctaccccactctacgtatcttaa 31158131  T

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Target: scaffold1408 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 1447 - 1527
Alignment:
Q  9 atcaattctacaaggtcattggggtgaaaacttgttggcaggcacttgaaaggatatctattccactcaacatatcttaat 89  Q
    |||||||||||||| |||   ||||||||||||| ||||||  ||||||||||||||| | |||| | |||||||| ||||    
T  1447 atcaattctacaagttcagcagggtgaaaacttgatggcagatacttgaaaggatatccagtccattgaacatatcgtaat 1527  T

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Target: scaffold0428 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 7193 - 7273
Alignment:
Q  9 atcaattctacaaggtcattggggtgaaaacttgttggcaggcacttgaaaggatatctattccactcaacatatcttaat 89  Q
    |||||||||||||| |||   ||||||||||||| ||||||  ||||||||||||||| | |||| | |||||||| ||||    
T  7193 atcaattctacaagttcagcagggtgaaaacttgatggcagatacttgaaaggatatccagtccattgaacatatcgtaat 7273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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