View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0493_1D_low_36 (Length: 228)
Name: NF0493_1D_low_36
Description: NF0493_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493_1D_low_36 |
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| [»] scaffold0003 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 24495360 - 24495159
Alignment:
| Q |
17 |
tggcacaatatatagaaacatatttgctgtcctaataattgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttga |
116 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24495360 |
tggcacaatatatagaaacatatttgttgtcctaataattgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttga |
24495261 |
T |
|
| Q |
117 |
tcacagaataactctcatcttaaatgcttaataatactagtatctcttaatttaaaagccttggtcctgtaaccttaacacgcccccgcaagataggggt |
216 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24495260 |
tcacagattaactctcatcttaaatgcttaataatactagtatctcttaatttaaaagccttggtcctgtaaccttaacacgcccccgcaagataggggt |
24495161 |
T |
|
| Q |
217 |
ac |
218 |
Q |
| |
|
|| |
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|
| T |
24495160 |
ac |
24495159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 17 - 196
Target Start/End: Complemental strand, 24491802 - 24491623
Alignment:
| Q |
17 |
tggcacaatatatagaaacatatttgctgtcctaataattgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttga |
116 |
Q |
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|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24491802 |
tggcacaatatatagaaacatatttgttgtcctaataattgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttga |
24491703 |
T |
|
| Q |
117 |
tcacagaataactctcatcttaaatgcttaataatactagtatctcttaatttaaaagccttggtcctgtaaccttaaca |
196 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24491702 |
tcacagattaactctcatcttaaatgcttaataatactagtatctcttaatttaaaagccttggtcctgtaaccttaaca |
24491623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 21 - 149
Target Start/End: Complemental strand, 2810354 - 2810226
Alignment:
| Q |
21 |
acaatatatagaaacatatttgctgtcctaataattgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcac |
120 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2810354 |
acaatatatagaaacatatttgttgtcctaataattgcttcctagagctatggtttgactttctctaatcaattacagtgtgatattatttcttaatcac |
2810255 |
T |
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| Q |
121 |
agaataactctcatcttaaatgcttaata |
149 |
Q |
| |
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|||||||||||| ||| |||||||||||| |
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| T |
2810254 |
agaataactctcgtctaaaatgcttaata |
2810226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 2810071 - 2810031
Alignment:
| Q |
157 |
tatctcttaatttaaaagccttggtcctgtaaccttaacac |
197 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| |
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| T |
2810071 |
tatctcttaatttaaaagccttggtcttgtaaccttaacac |
2810031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 17 - 196
Target Start/End: Complemental strand, 24359115 - 24358936
Alignment:
| Q |
17 |
tggcacaatatatagaaacatatttgctgtcctaataattgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttga |
116 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24359115 |
tggcacaatatatagaaacatatttgttgtcctaataattgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttga |
24359016 |
T |
|
| Q |
117 |
tcacagaataactctcatcttaaatgcttaataatactagtatctcttaatttaaaagccttggtcctgtaaccttaaca |
196 |
Q |
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|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24359015 |
tcacagattaactctcatcttaaatgcttaataatactagtatctcttaatttaaaagccttggtcctgtaaccttaaca |
24358936 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 21 - 218
Target Start/End: Original strand, 18556637 - 18556833
Alignment:
| Q |
21 |
acaatatatagaaacatatttgctgtcctaataattgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcac |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
18556637 |
acaatatatagaaacatatttgctgtcctaataattgcttcctccagctatggtttgactttctctagtcaattatagtgtgatattatttcttgatcac |
18556736 |
T |
|
| Q |
121 |
agaataactctcatcttaaatgcttaataatactagtatctcttaatttaaaagccttggtcctgtaaccttaacacgcccccgcaagataggggtac |
218 |
Q |
| |
|
||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18556737 |
agaataactctcatcttaaatgcttaatacta-gaatatctcttaatttaaaagccttggtcctgtaaccttaacacgcccccgcaagataggggtac |
18556833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 17 - 181
Target Start/End: Complemental strand, 86861 - 86693
Alignment:
| Q |
17 |
tggcacaatatatagaaacatatttgctgtcctaataattgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
86861 |
tggcacaatatatagaaacatatttgctgtcctaataattgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttga |
86762 |
T |
|
| Q |
117 |
tcacagaataactctcatcttaaatgcttaataata----ctagtatctcttaatttaaaagccttggt |
181 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || || |||| |||||||||||||||||||| |
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|
| T |
86761 |
tcacagaataactctcatcttaaatgcttaatactagaatataatatcacttaatttaaaagccttggt |
86693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 165 - 218
Target Start/End: Complemental strand, 86677 - 86624
Alignment:
| Q |
165 |
aatttaaaagccttggtcctgtaaccttaacacgcccccgcaagataggggtac |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
86677 |
aatttaaaagccttggtcctgtaaccttaacacgcccctgcaagataggggtac |
86624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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