View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0493_1D_low_4 (Length: 509)
Name: NF0493_1D_low_4
Description: NF0493_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493_1D_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 462; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 1 - 506
Target Start/End: Original strand, 14174279 - 14174783
Alignment:
| Q |
1 |
gcgttaagctcgtcgagcccaacaagtggtatcagagctccggttggagctcgagagtatagtgtaaattaaatggaggagaacactggtaacactggta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
14174279 |
gcgttaagctcgtcgagcccaacaagtggtatcagagctccggttggagcttgagagtatagtgtaaattaaatggaggagaaaactggtaacactggta |
14174378 |
T |
|
| Q |
101 |
cgatgattaaactcacttctacaaactactccatttggaagccaaaaatggaggatatactttactacaaggatatgtatgatcctgtagaaaagggaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14174379 |
cgatgattaaactcacttctacaaactactccatttggaagccaaaaatggaggatatactttactacaaggatatgtatgatcctgtagaaaagggaga |
14174478 |
T |
|
| Q |
201 |
cacgaagccagataaggtgacagatgaagactggaaaaagtctcatcggaaggctgtcagtctgattaggcagtgggtggatcttagtgtattccaccat |
300 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14174479 |
cacgaagccagataaggtgacggatgaagactggaaaaagtctcatcggaaggttgtcagtctgattaggcagtgggtggatcttagtgtattccaccat |
14174578 |
T |
|
| Q |
301 |
gtggccacagagacaaatgcccagactctgtggaagaacatcgaaaagatgtatcaaagaaagaccgcacaaaacaaaactttcgctattagaaagttgg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14174579 |
gtggccacagagacaaatgcccagactctgtggaagaacatcgaaaagatgtatcaaagaaagaccgcacaaaacaaaactttcgcta-tagaaagttgg |
14174677 |
T |
|
| Q |
401 |
tgaatttaaagtatcgggagggaagatcagttgccgagcacttgagtgactttcaagacttggtaaaccaattggttgccatgaagctggtgctggatga |
500 |
Q |
| |
|
||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
14174678 |
tgaatctaaagtaccgagagggaagatcagttgccgagcacttgagtgactttcaagacttggtaaaccaattggttgccatgaagttggtgctggatga |
14174777 |
T |
|
| Q |
501 |
cgaatt |
506 |
Q |
| |
|
||||| |
|
|
| T |
14174778 |
tgaatt |
14174783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 1 - 506
Target Start/End: Complemental strand, 28611591 - 28611094
Alignment:
| Q |
1 |
gcgttaagctcgtcgagcccaacaagtggtatcagagctccggttggagctcgagagtatagtgtaaattaaatggaggagaacactggtaacactggta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28611591 |
gcgttaagctcgtcgagcccaacaagtggtatcagagctccgattggagctcgagagtatagtgtaaattaaatggaggagaacactggta--------- |
28611501 |
T |
|
| Q |
101 |
cgatgattaaactcacttctacaaactactccatttggaagccaaaaa-tggaggatatactttactacaaggatatgtatgatcctgtagaaaagggag |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28611500 |
cgatgattaaactcacttctacaaactactccatttggaagccaaaaaatggaggatatactttactacaaggatatgtatgatcctgtagaaaagggag |
28611401 |
T |
|
| Q |
200 |
acacgaagccagataaggtgacagatgaagactggaaaaagtctcatcggaaggctgtcagtctgattaggcagtgggtggatcttagtgtattccacca |
299 |
Q |
| |
|
|||| |||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28611400 |
acacaaagccagataaggttacggatgaagactggaaaaagtctcatcggaaggctgttagtctgattaggcagtgggtggatcttagtgtattccacca |
28611301 |
T |
|
| Q |
300 |
tgtggccacagagacaaatgcccagactctgtggaagaacatcgaaaagatgtatcaaagaaagaccgcacaaaacaaaactttcgctattagaaagttg |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
28611300 |
tgtggccacagagacaaatgcccagactctgtggaagaacatcgaaaagatgtatcaaagaaagaacgcacaaaacaaaactttcgctattagaaagttg |
28611201 |
T |
|
| Q |
400 |
gtgaatttaaagtatcgggagggaagatcagttgccgagcacttgagtgactttcaagacttggtaaaccaattggttgccatgaagctggtgctggatg |
499 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
28611200 |
gtgaatctaaagtatcgggagggaagatcagttgccgagcacttgagtgactttcaagacttggtaaaccaattggttgccatgaagttggtgctggatg |
28611101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 1 - 506
Target Start/End: Original strand, 12931017 - 12931513
Alignment:
| Q |
1 |
gcgttaagctcgtcgagcccaacaagtggtatcagagctccggttggagctcgagagtatagtgtaaattaaatggaggagaacactggtaacactggta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
12931017 |
gcgttaagctcgtcgagcccaacaagtggtatcagagctccggttggagctcgagagtatagtgtaaattaaatggaggagaaca---------ctggta |
12931107 |
T |
|
| Q |
101 |
cgatgattaaactcacttctacaaactactccatttggaagccaaaaatggaggatatactttactacaaggatatgtatgatcctgtagaaaagggaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12931108 |
cgatgattaaactcacttctacaaactactccatttggaagccaaaaatggaggatatactttactacaaggatatgtatgatcctgtagaaaagggaga |
12931207 |
T |
|
| Q |
201 |
cacgaagccagataaggtgacagatgaagactggaaaaagtctcatcggaaggctgtcagtctgattaggcagtgggtggatcttagtgtattccaccat |
300 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12931208 |
cacgaagccagataaggtgacggatgaagactggaaaaagtctcatcggaaggctgtcagtctgattaggcagtgggtggatcttagtgtattccaccat |
12931307 |
T |
|
| Q |
301 |
gtggccacagagacaaatgcccagactctgtggaagaacatcgaaaagatgtatcaaagaaagaccgcacaaaacaaaactttcgctattagaaagttgg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12931308 |
gtggccacagagacaaatgcccagactctgtggaagaacatcgaaaagatgtatcaaagaaagaccgcacaaaacaaaactttcgctattagaaagttgg |
12931407 |
T |
|
| Q |
401 |
tgaatttaaagtatcgggagggaagatcagttgccgagcacttgagtgactttcaagacttggtaaaccaattggttgccatgaagctggtgctggatga |
500 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
12931408 |
tgaatctaaagtaccgggagggaagatcagttgccgagcacttgagtgactttcaagacttggtaaaccaattggttgccatgaagttggtgctgaatga |
12931507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 398; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 4 - 485
Target Start/End: Original strand, 51302999 - 51303480
Alignment:
| Q |
4 |
ttaagctcgtcgagcccaacaagtggtatcagagctccggttggagctcgagagtatagtgtaaattaaatggaggagaacactggtaacactggtacga |
103 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||| | |
|
|
| T |
51302999 |
ttaagctcgtcgatcccaacaagtggtatcggagctccagttggagctcgagattatagtgtaaattaaatggaagagaacattggtaacactggtacaa |
51303098 |
T |
|
| Q |
104 |
tgattaaactcacttctacaaactactccatttggaagccaaaaatggaggatatactttactacaaggatatgtatgatcctgtagaaaagggagacac |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
51303099 |
tgattaaactcacttctacaaactactccatttggaagccaaaaatggaggatatactttactgcaaggatatgtatgatcctgtagaaaagggagacac |
51303198 |
T |
|
| Q |
204 |
gaagccagataaggtgacagatgaagactggaaaaagtctcatcggaaggctgtcagtctgattaggcagtgggtggatcttagtgtattccaccatgtg |
303 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
51303199 |
taagccatataaggtgacaaatgaagactggaaaaagtctcatcggaaggctgtcagtctcatcaggcagcgggtggatcttagtgtattccaccatgtg |
51303298 |
T |
|
| Q |
304 |
gccacagagacaaatgcccagactctgtggaagaacatcgaaaagatgtatcaaagaaagaccgcacaaaacaaaactttcgctattagaaagttggtga |
403 |
Q |
| |
|
| || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
51303299 |
gtcatagagacaaatgcccagactctgtggaagaacatcaaaaagatgtatcaaagaaagatcgcacaaaacaaaactttcgctattaaaaatttggtga |
51303398 |
T |
|
| Q |
404 |
atttaaagtatcgggagggaagatcagttgccgagcacttgagtgactttcaagacttggtaaaccaattggttgccatgaa |
485 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51303399 |
atttaaagtatcgggagggaagatcagttgtcgagcacttgagtgactttcaagacttggtaaaccaattggttgccatgaa |
51303480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 98 - 486
Target Start/End: Complemental strand, 24876720 - 24876330
Alignment:
| Q |
98 |
gtacgatgattaaactcacttctacaaactactccatttggaagccaaaaatggaggatatactttactacaaggatatgtatgatcctgtagaaaaggg |
197 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||||||| | |||| ||||||||||||||||| ||| |||| |||||||||| ||||||||| |
|
|
| T |
24876720 |
gtacgatgattaaactcacttctagaaactacttcatttggaagtcgaaaacggaggatatactttactgcaatgatacatatgatcctgcagaaaaggg |
24876621 |
T |
|
| Q |
198 |
agacacgaagccagataaggtgacagatgaagactggaaaaa-gtctcatcggaaggctgtcagtctgattaggcagtgggtggatcttagtgtattcca |
296 |
Q |
| |
|
||||||| |||||||||| | || |||||||||||||||| || | |||||||| ||| ||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
24876620 |
agacacggagccagataaaattacgaatgaagactggaaaaaagttttgtcggaaggttgttagtttgcttaggcagtgggtggatcttagtgtattcca |
24876521 |
T |
|
| Q |
297 |
ccatgtggc-cacagagacaaatgcccagactctgtggaagaacatcgaaaagatgtatcaaagaaagaccgcacaaaacaaaactttcgctattagaaa |
395 |
Q |
| |
|
|||||||| |||| |||| |||||||| |||| ||||||||||||||||| || ||||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
24876520 |
ccatgtggggcacatagacgaatgcccatactccatggaagaacatcgaaaatatatatcaaagaaataccgcacaaaacaaaactttcactattagaaa |
24876421 |
T |
|
| Q |
396 |
gttggtgaatttaaagtatcgggagggaagatcagttgccgagcacttgagtgactttcaagacttggtaaaccaattggttgccatgaag |
486 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
24876420 |
gttggtgaatttaaagtatcaggagggaagatcggttgccaagcacttgagtgactttcaatacttgctaaaccaattggttgccatgaag |
24876330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 3e-34; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 316 - 506
Target Start/End: Complemental strand, 38996890 - 38996700
Alignment:
| Q |
316 |
aatgcccagactctgtggaagaacatcgaaaagatgtatcaaagaaagaccgcacaaaacaaaactttcgctattagaaagttggtgaatttaaagtatc |
415 |
Q |
| |
|
|||| ||| ||| |||||| |||||| |||||||| |||||||||||||| ||||| |||||| | | | ||||||||||||||||| | |||||||| |
|
|
| T |
38996890 |
aatgtccaaactttgtggatgaacattgaaaagatttatcaaagaaagactccacaacacaaaattgttgatattagaaagttggtgattgtaaagtatt |
38996791 |
T |
|
| Q |
416 |
gggagggaagatcagttgccgagcacttgagtgactttcaagacttggtaaaccaattggttgccatgaagctggtgctggatgacgaatt |
506 |
Q |
| |
|
||| || ||||||||||| | ||||||| |||||||||||||||||||||||||||||||| | || || ||||| |||||||| |||| |
|
|
| T |
38996790 |
ggggggaaagatcagttgttaaacacttgattgactttcaagacttggtaaaccaattggttgtcttgtagttggtgttggatgacaaatt |
38996700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 110 - 281
Target Start/End: Complemental strand, 38997071 - 38996901
Alignment:
| Q |
110 |
aactcacttctacaaactactccatttggaagccaaaaatggaggatatactttactacaaggatatgtatgatcctgtagaaaagggagacacgaagcc |
209 |
Q |
| |
|
||||||||||||||||||||| || || ||| | |||||| |||||||| |||| ||| |||||||||||| |||||||||||||||| || ||| | |
|
|
| T |
38997071 |
aactcacttctacaaactacttcagttaaaagtcgaaaatgaaggatataatttataacatggatatgtatgaccctgtagaaaagggaggcatgaa-ct |
38996973 |
T |
|
| Q |
210 |
agataaggtgacagatgaagactggaaaaagtctcatcggaaggctgtcagtctgattaggcagtgggtgga |
281 |
Q |
| |
|
||| || ||||| ||| || |||| |||||||||||| ||||| |||||||||| ||||||||| |||||| |
|
|
| T |
38996972 |
agacaaagtgactgataaaaactgaaaaaagtctcataagaaggttgtcagtctggttaggcagttggtgga |
38996901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 281 - 384
Target Start/End: Complemental strand, 38994466 - 38994363
Alignment:
| Q |
281 |
atcttagtgtattccaccatgtggccacagagacaaatgcccagactctgtggaagaacatcgaaaagatgtatcaaagaaagaccgcacaaaacaaaac |
380 |
Q |
| |
|
|||||| ||| |||||||||||||||| ||||||||||||| | ||| |||||||| ||| ||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
38994466 |
atcttattgttttccaccatgtggccatagagacaaatgcctaaactttgtggaaggacagtgaaaatatgtatcaaagaaataccgcacaaaacaaaat |
38994367 |
T |
|
| Q |
381 |
tttc |
384 |
Q |
| |
|
|||| |
|
|
| T |
38994366 |
tttc |
38994363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 38994719 - 38994631
Alignment:
| Q |
4 |
ttaagctcgtcgagcccaacaagtggtatcagagctccggttggagctcgagagtatagtgtaaattaaatgga-ggagaacactggta |
91 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||| |||| | ||||||| ||| |||| |||||| ||| |||||||||||||| |
|
|
| T |
38994719 |
ttaagatcgtcaagcccaacaagtggtatcagagctctagttgaaactcgagattattatgtatattaaacggagggagaacactggta |
38994631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 162 - 245
Target Start/End: Complemental strand, 38994624 - 38994541
Alignment:
| Q |
162 |
ttactacaaggatatgtatgatcctgtagaaaagggagacacgaagccagataaggtgacagatgaagactggaaaaagtctca |
245 |
Q |
| |
|
|||| ||||||||||||||| || |||||||||||| |||| |||| |||| || |||| ||||||||||| ||| ||||||| |
|
|
| T |
38994624 |
ttacaacaaggatatgtatgttcatgtagaaaagggggacatgaagtcagacaaagtgatagatgaagactaaaaagagtctca |
38994541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 15290571 - 15290616
Alignment:
| Q |
1 |
gcgttaagctcgtcgagcccaacaagtggtatcagagctccggttg |
46 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15290571 |
gcgttaagctcgtcgagcccaacaagtggtatcagagctccggttg |
15290616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 2757232 - 2757156
Alignment:
| Q |
5 |
taagctcgtcgagcccaacaagtggtatcagagctccggttggagctcgagagtatagtgtaaattaaatggaggag |
81 |
Q |
| |
|
||||||||| || | ||||||||| ||| ||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
2757232 |
taagctcgttgaacacaacaagtgatataagagcatttgttggagctcgagattatagtgtaaattaaatggaggag |
2757156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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