View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0493_1D_low_40 (Length: 220)
Name: NF0493_1D_low_40
Description: NF0493_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493_1D_low_40 |
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Alignment Details
Target: chr6 (Bit Score: 128; Significance: 2e-66; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 24 - 171
Target Start/End: Original strand, 14427667 - 14427814
Alignment:
| Q |
24 |
aactcaccatgaaaactattgccatgtagatcaagaacagcaaggaaagagagatttcccaattgaggagaaatgatacctttaaggcccatgttactaa |
123 |
Q |
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| T |
14427667 |
aactcaccatggaaactattgccatgtagatcaagaacaacaaggaaagagagatttcctaattgaggagaaatgttaccttcaaggcccatgttactaa |
14427766 |
T |
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| Q |
124 |
gattcaatgcatttactcttccatgatgttcatcacaagtaacaccaa |
171 |
Q |
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| T |
14427767 |
gattcaatgcatttactcttccatgatgttcatcacaagtaacaccaa |
14427814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 104; Significance: 5e-52; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 24 - 171
Target Start/End: Original strand, 5083885 - 5084032
Alignment:
| Q |
24 |
aactcaccatgaaaactattgccatgtagatcaagaacagcaaggaaagagagatttcccaattgaggagaaatgatacctttaaggcccatgttactaa |
123 |
Q |
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||||||||||| |||||||| || ||||||||||||| |||||||||||||||||||||||||||| ||||| |||||| |||| |||||||||||| |
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| T |
5083885 |
aactcaccatggaaactatttccttgtagatcaagaaatacaaggaaagagagatttcccaattgaggggaaattgtaccttcaaggtccatgttactaa |
5083984 |
T |
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| Q |
124 |
gattcaatgcatttactcttccatgatgttcatcacaagtaacaccaa |
171 |
Q |
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| T |
5083985 |
gattcaatgcatttactcttccatgatgttcatcacaagtaacaccaa |
5084032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 24 - 171
Target Start/End: Complemental strand, 5094183 - 5094036
Alignment:
| Q |
24 |
aactcaccatgaaaactattgccatgtagatcaagaacagcaaggaaagagagatttcccaattgaggagaaatgatacctttaaggcccatgttactaa |
123 |
Q |
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||||||||||| ||||||||||| |||| |||||||||| ||||||||| ||||||||||||||||||||||| |||||| |||||||||| |||||| |
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| T |
5094183 |
aactcaccatggaaactattgccctgtaaatcaagaacaataaggaaagaaagatttcccaattgaggagaaattgtaccttcaaggcccatgctactaa |
5094084 |
T |
|
| Q |
124 |
gattcaatgcatttactcttccatgatgttcatcacaagtaacaccaa |
171 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
5094083 |
gattcaatgcatttactcttccatggtgttcatcacaagtaacaccaa |
5094036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 24 - 171
Target Start/End: Complemental strand, 5111186 - 5111039
Alignment:
| Q |
24 |
aactcaccatgaaaactattgccatgtagatcaagaacagcaaggaaagagagatttcccaattgaggagaaatgatacctttaaggcccatgttactaa |
123 |
Q |
| |
|
|||||||||| ||||||||||| |||| |||||||||| |||||||||| ||||||||||||||||||||||| |||||| |||| |||||||| ||| |
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| T |
5111186 |
aactcaccatagaaactattgccttgtaaatcaagaacaacaaggaaagaaagatttcccaattgaggagaaattgtaccttcaaggtccatgttattaa |
5111087 |
T |
|
| Q |
124 |
gattcaatgcatttactcttccatgatgttcatcacaagtaacaccaa |
171 |
Q |
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||| ||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
5111086 |
gatccaatgcattcactcttccatgatgttcatcacaagtaacaccaa |
5111039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 100 - 171
Target Start/End: Complemental strand, 16872553 - 16872482
Alignment:
| Q |
100 |
tacctttaaggcccatgttactaagattcaatgcatttactcttccatgatgttcatcacaagtaacaccaa |
171 |
Q |
| |
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|||||| ||| ||||| ||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||| |
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| T |
16872553 |
taccttcaagtcccatattactaagattcaatgcctttactcttccatgatgctcatcacaagtgacaccaa |
16872482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 23 - 90
Target Start/End: Complemental strand, 16873444 - 16873377
Alignment:
| Q |
23 |
aaactcaccatgaaaactattgccatgtagatcaagaacagcaaggaaagagagatttcccaattgag |
90 |
Q |
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|||||||||||| ||||||||||| ||||| ||||||| | ||||||||||||||||||||||||||| |
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| T |
16873444 |
aaactcaccatggaaactattgccttgtaggtcaagaataacaaggaaagagagatttcccaattgag |
16873377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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