View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0493_1D_low_45 (Length: 209)
Name: NF0493_1D_low_45
Description: NF0493_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493_1D_low_45 |
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Alignment Details
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 12 - 186
Target Start/End: Original strand, 15628553 - 15628727
Alignment:
| Q |
12 |
gttccttagctgaaaaggtaatgtgtaaaaagcatggcccatttcattgtttgtgtgatttgttaatcttatcatcccatttttctctatctctgcaaat |
111 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15628553 |
gttccttagctgaaaaggtaatgagtaaaaagcatggcccatttcattgtttgtgtgatttgttaatcttatcatcccatttttctctatctctgcaaaa |
15628652 |
T |
|
| Q |
112 |
ccattcaaggttagattgttgggaccaacatccttgaatcctgcatacaagaactgattaacttgcgataaaact |
186 |
Q |
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| T |
15628653 |
ccattcaaggtaagattgttgggaccaacatccttgaatcctgcatacaagaactggttaacttgggataaaact |
15628727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 146
Target Start/End: Complemental strand, 22933119 - 22932985
Alignment:
| Q |
12 |
gttccttagctgaaaaggtaatgtgtaaaaagcatggcccatttcattgtttgtgtgatttgttaatcttatcatcccatttttctctatctctgcaaat |
111 |
Q |
| |
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|||| |||||||||||||| | ||||||||||||||||||| ||| ||| | ||||||||||||||| || |||||||||||||||| ||||| |
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| T |
22933119 |
gttctttagctgaaaaggttgagagtaaaaagcatggcccattaatttgcttgaatcatttgttaatcttattattccatttttctctatctttgcaaca |
22933020 |
T |
|
| Q |
112 |
ccattcaaggttagattgttgggaccaacatcctt |
146 |
Q |
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|| || ||||||| |||| ||| |||| ||||||| |
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| T |
22933019 |
ccgtttaaggttaaattgctggcaccaccatcctt |
22932985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 22922526 - 22922603
Alignment:
| Q |
69 |
atttgttaatcttatcatcccatttttctctatctctgcaaatccattcaaggttagattgttgggaccaacatcctt |
146 |
Q |
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||||||||||||||| || |||||||| ||||||||||| | ||||| |||||||| || || |||||||||||||| |
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| T |
22922526 |
atttgttaatcttattataccatttttttctatctctgctataccatttaaggttaggttttttggaccaacatcctt |
22922603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 107
Target Start/End: Original strand, 24382698 - 24382736
Alignment:
| Q |
69 |
atttgttaatcttatcatcccatttttctctatctctgc |
107 |
Q |
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||||||||||||||| || |||||||||||||||||||| |
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| T |
24382698 |
atttgttaatcttattataccatttttctctatctctgc |
24382736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 105
Target Start/End: Complemental strand, 36386081 - 36386045
Alignment:
| Q |
69 |
atttgttaatcttatcatcccatttttctctatctct |
105 |
Q |
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||||||||||||||| || |||||||||||||||||| |
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|
| T |
36386081 |
atttgttaatcttattataccatttttctctatctct |
36386045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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