View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0493_1D_low_47 (Length: 205)

Name: NF0493_1D_low_47
Description: NF0493_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0493_1D_low_47
NF0493_1D_low_47
[»] chr6 (4 HSPs)
chr6 (19-200)||(10001321-10001502)
chr6 (19-200)||(9995416-9995594)
chr6 (19-158)||(9989266-9989405)
chr6 (19-158)||(10010949-10011088)


Alignment Details
Target: chr6 (Bit Score: 166; Significance: 5e-89; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 10001502 - 10001321
Alignment:
Q  19 accatctgaccaattttctcttccaaagtcatcctgtcgagaagatccttgattcgagtattcaacggctgctttgaatctttgtatctcaaatgcttag 118  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  10001502 accatctgaccaattttctcttccaaagtcatcctgtcaataagatccttgattcgagtattcaacggctgctttgaatctttgtatctcaaatgctccg 10001403  T
Q  119 cttctgccattgctacccaacaatggaagagcactagcccggccaccaaagagattgcacctttgaccatttctccctctca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10001402 cttctgccattgctacccaacaatggaagagcactagcccggccaccaaagagattgcacctttgaccatttctccctctca 10001321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 9995594 - 9995416
Alignment:
Q  19 accatctgaccaattttctcttccaaagtcatcctgtcgagaagatccttgattcgagtattcaacggctgctttgaatctttgtatctcaaatgcttag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  9995594 accatctgaccaattttctcttccaaagtcatcctgtcgagaagatccttgattcgagtattcaatggctgctttgaatctttgtatctcaaatgcttag 9995495  T
Q  119 cttctgccattgctacccaacaatggaagagcactagcccggccaccaaagagattgcacctttgaccatttctccctctca 200  Q
    |||||||||| |||||| |  | || |||||||| ||||   |||||||| | |||| || |||| |||||||| |||||||    
T  9995494 cttctgccatagctaccaagtagtgcaagagcacaagcc---ccaccaaaaacattgtacttttggccatttctacctctca 9995416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 19 - 158
Target Start/End: Complemental strand, 9989405 - 9989266
Alignment:
Q  19 accatctgaccaattttctcttccaaagtcatcctgtcgagaagatccttgattcgagtattcaacggctgctttgaatctttgtatctcaaatgcttag 118  Q
    ||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||    
T  9989405 accatctgaccgattttctcttccaaagtcatcctgtcaacaagatccttgattcgagtattcaatggctgctttggatctttgtatctcaaatgctcag 9989306  T
Q  119 cttctgccattgctacccaacaatggaagagcactagccc 158  Q
    |||||||||| |||||| | || || |||||||| |||||    
T  9989305 cttctgccatagctaccaagcagtgcaagagcacaagccc 9989266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 19 - 158
Target Start/End: Complemental strand, 10011088 - 10010949
Alignment:
Q  19 accatctgaccaattttctcttccaaagtcatcctgtcgagaagatccttgattcgagtattcaacggctgctttgaatctttgtatctcaaatgcttag 118  Q
    |||||||||||||||||||||||||| ||||| ||||| | |||||||||||||| |||||||||  |||| |||| |||||||||| | |||| || ||    
T  10011088 accatctgaccaattttctcttccaatgtcattctgtccataagatccttgattctagtattcaatagctgttttggatctttgtatttgaaattctcag 10010989  T
Q  119 cttctgccattgctacccaacaatggaagagcactagccc 158  Q
    |||||||||||| || ||||||||||||||||| ||||||    
T  10010988 cttctgccattgttatccaacaatggaagagcaatagccc 10010949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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