View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0493_1D_low_5 (Length: 470)
Name: NF0493_1D_low_5
Description: NF0493_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493_1D_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 22 - 446
Target Start/End: Original strand, 36442892 - 36443312
Alignment:
| Q |
22 |
actgtgaagctatgaagaagttagggatgaaactgatggagatattagctataagtctgggattagataggttccattttaagtccttatttgaagatgg |
121 |
Q |
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| T |
36442892 |
actgtgaagctatgaagaagttagggatgaaactgatggagatattagctataagtctgggattagataggttccattttaagtccttatttgaagatgg |
36442991 |
T |
|
| Q |
122 |
ttgttccataatgagatgcaactattacccatcatgccaagaaccaagtgttgcattagggacaggaccacattgtgacccaacaacattaacaatactt |
221 |
Q |
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| T |
36442992 |
ttgttccataatgagatgcaactattacccatcatgccaagaaccaagtgttgcattagggacaggaccacattgtgacccaacaacattaacaatactt |
36443091 |
T |
|
| Q |
222 |
caccaagatcaagttggagggcttgatgtgtttgctgaccagaaatggcagacggttagacctcgttcagatgcatttgttgttaacattggtgatactt |
321 |
Q |
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| T |
36443092 |
caccaagatcaagttggagggcttgatgtgtttgctgaccagaaatggcagacggttagacctcgttcagatgcatttgttgttaacattggtgatactt |
36443191 |
T |
|
| Q |
322 |
tcacggtatgtatgtaggacctctctaaatatattactatagcattacatcatatgcatatgcatgataataataattacaaaatgnnnnnnnnnngtat |
421 |
Q |
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| T |
36443192 |
tcacggtatgtatgtaggacct---tactcatagcattacatcatagattcatatgcatatgcatgataataataattacaaaatg-ttattttttgtat |
36443287 |
T |
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| Q |
422 |
gcttctatatctttactttgtggct |
446 |
Q |
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| T |
36443288 |
gcttctatatctttactttgtggct |
36443312 |
T |
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