View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0493_1D_low_6 (Length: 465)
Name: NF0493_1D_low_6
Description: NF0493_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493_1D_low_6 |
 | |
|
| [»] scaffold1408 (2 HSPs) |
| | |
|
| [»] scaffold0428 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 395; Significance: 0; HSPs: 17)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 14 - 443
Target Start/End: Complemental strand, 33272604 - 33272174
Alignment:
| Q |
14 |
gacatcaaacaactatggaaaaacaagaaggtacctataaattctattattaatgtttatcttagaaatataaacaaattcaaaacaattctcttaaaat |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
33272604 |
gacatcaaacaactatggaaaaacaagaaggtacctataaattctattattaatgtttatcttagaaatataaacaaatttgaaacaattctcttagaat |
33272505 |
T |
|
| Q |
114 |
caatgtaatggttctatttttgttattttttcatgtcagtatcttcccaatttgagaagattgggtctaagttactccagaaaactagtaaagattgtag |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
33272504 |
caatgtaatggttctatttttgttattttttcatgtcagtatcttcccaatttgagaagattgggtctaagttactccagaaaactattaaagattgtag |
33272405 |
T |
|
| Q |
214 |
attttggagagttcccgaatcttgagtggttaaatttggaagggtgtaaaaatcttgtggagttggatccatctattggacttctaagaaagcttgttta |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33272404 |
attttggagagttcccgaatcttgagtggttaaatttggaagggtgtaaaaatcttgtggagttggatccatctattggacttctaagaaagcttgttta |
33272305 |
T |
|
| Q |
314 |
cttgaatttagaagattgcaaaaatcta-caagcatacccaacaacatatttgatctttgctctcttgaagatctaaatatgcgtggttgttctaaagtg |
412 |
Q |
| |
|
|||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33272304 |
cttgaatttaaaaaattgcaaaaatctagtaagcatacccaacaacatatttgatctttgctctcttgaagatctaaatatgcgtggttgttctaaagtg |
33272205 |
T |
|
| Q |
413 |
tttaacaatccaatgcatttgaagaagtctg |
443 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
33272204 |
tttaacaatccaatgcatttgaagaagtctg |
33272174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 15 - 443
Target Start/End: Complemental strand, 33058367 - 33057933
Alignment:
| Q |
15 |
acatcaaacaactatggaaaaacaagaaggtacctataaattctattatta---atgtttatc---ttagaaatataaacaaattcaaaacaattctctt |
108 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
33058367 |
acattaaacaactatggaaaaacaagaaggtac-tataaattctattattattaatatttatcatcttagaaatataaacaaattcaaaacaattctctt |
33058269 |
T |
|
| Q |
109 |
aaaatcaatgtaatggttctatttttgttattttttcatgtca--gtatcttcccaatttgagaagattgggtctaagttactccagaaaactagtaaag |
206 |
Q |
| |
|
| |||||| ||||||| ||| |||||| ||||||| |||| |||||||||||||||||||| ||||| |||| || |||||||||| |||| |||| |
|
|
| T |
33058268 |
acaatcaaagtaatgg--ctaactttgttggtttttcacgtcacagtatcttcccaatttgagaacattggatctacgtcactccagaaatctagaaaag |
33058171 |
T |
|
| Q |
207 |
attgtagattttggagagttcccgaatcttgagtggttaaatttggaagggtgtaaaaatcttgtggagttggatccatctattggacttctaagaaagc |
306 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| | ||| |||||||||| |||| ||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
33058170 |
ataatagattttggagagttcccgaatcttgagcgtttagatttggaaggatgtataaaccttgttgagttggatccatctattggacttctaagaaagc |
33058071 |
T |
|
| Q |
307 |
ttgtttacttgaatttagaagattgcaaaaatcta-caagcatacccaacaacatatttgatctttgctctcttgaagatctaaatatgcgtggttgttc |
405 |
Q |
| |
|
||||||||||||| || |||||||||||| |||| |||||||||||||||||||| | |||| |||||||| || | ||||||||| |||| ||||| |
|
|
| T |
33058070 |
ttgtttacttgaacctaaaagattgcaaaagtctagttagcatacccaacaacatattcggtcttagctctcttcaatacctaaatatgtgtggctgttc |
33057971 |
T |
|
| Q |
406 |
taaagtgtttaacaatccaatgcatttgaagaagtctg |
443 |
Q |
| |
|
||||| |||||||| |||| || ||||| |||||||| |
|
|
| T |
33057970 |
caaagtatttaacaacccaaggcgtttgatgaagtctg |
33057933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 21 - 439
Target Start/End: Complemental strand, 33305281 - 33304858
Alignment:
| Q |
21 |
aacaactatggaaaaacaagaaggtacctataaattct---attattaatgtttatcttagaaatataaacaaattcaaaacaattctcttaaaatcaat |
117 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| | |||||||| ||| | | |||| |
|
|
| T |
33305281 |
aacaactatggacaaacaagaaggtac-tataaattctcttattattaatgtttatcttagaaatataaacaaaattgaaacaattatctcatagtcaaa |
33305183 |
T |
|
| Q |
118 |
gtaatggttctatttttgttattttttcatgtc--agtatcttcccaatttgagaagattgggtctaagttactccagaaaactagtaaagattgtagat |
215 |
Q |
| |
|
||||| | | |||||||||| |||| |||||| ||||||| |||||||||| | |||| |||||| ||||| | ||||||||||||| ||||| |
|
|
| T |
33305182 |
gtaattggtgtatttttgtttgttttacatgtcccagtatctgcccaatttgaaacatttggatctaagacactccttagaactagtaaagatactagat |
33305083 |
T |
|
| Q |
216 |
tttggagagttcccgaatcttgagtggttaaatttggaagggtgtaaaaatcttgtggagttggatccatctattggacttctaagaaagcttgtttact |
315 |
Q |
| |
|
||||| |||||||||||||||||| | ||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33305082 |
tttggggagttcccgaatcttgagaagctaaatttggaaggatgtataaaccttgtggagttggatccatctattggacttctaagaaagcttgtttact |
33304983 |
T |
|
| Q |
316 |
tgaatttagaagattgcaaaaatcta-caagcatacccaacaacatatttgatctttgctctcttgaagatctaaatatgcgtggttgttctaaagtgtt |
414 |
Q |
| |
|
|||||||| | || |||||||||||| |||||||||||| |||||||| |||| ||||||||||||||||||||||| ||| ||||| |||||||| |
|
|
| T |
33304982 |
tgaatttatatgaatgcaaaaatctagtaagcatacccaataacatattcagtcttagctctcttgaagatctaaatatgtatggatgttccaaagtgtt |
33304883 |
T |
|
| Q |
415 |
taacaatccaatgcatttgaagaag |
439 |
Q |
| |
|
||| ||||||||||||||||||||| |
|
|
| T |
33304882 |
taaaaatccaatgcatttgaagaag |
33304858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 15 - 394
Target Start/End: Complemental strand, 33286349 - 33285965
Alignment:
| Q |
15 |
acatcaaacaactatggaaaaacaagaaggtacctataaattctattatta---atgtttatcttagaaatataaacaaattcaaaacaattctcttaaa |
111 |
Q |
| |
|
|||| ||||||||||||| ||| |||||||||| |||||||| | |||||| ||||| |||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
33286349 |
acattaaacaactatggagaaagaagaaggtac-tataaattatcttattataaatgttcatcttagaaatataaacaaatttgaaacaattctcttaaa |
33286251 |
T |
|
| Q |
112 |
atcaatgtaatggttctatttttgttattttttcatgt--cagtatcttcccaatttgagaagattgggtctaagttactccagaaaactagtaaagatt |
209 |
Q |
| |
|
||||| |||||| || ||||||||| |||||||| | |||||||||||||||||||| |||||| |||| | ||||||| ||||||||||||||| |
|
|
| T |
33286250 |
atcaaattaatggctccatttttgtttgtttttcatattacagtatcttcccaatttgaggggattggatctacgatactccaaaaaactagtaaagata |
33286151 |
T |
|
| Q |
210 |
gtagattttggagagttcccgaatcttgagtggttaaatttggaagggtgtaaaaatcttgtggagttggatccatctattggacttctaagaaagcttg |
309 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| |||| | ||| |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
33286150 |
gtagatttcggagagttcccgaatcttgagtggttaaatttggaaggatgtatcagccttttggagttggatccatctattggacttctaagaaaccttg |
33286051 |
T |
|
| Q |
310 |
tttacttgaatttagaagattgcaaaaatc-tacaagcatacccaacaacatatttgatctttgctctcttgaagatctaaatatg |
394 |
Q |
| |
|
|||||||||||||| ||||||||||||||| | ||||||||||||||||||||| | ||| |||||||| || ||||| ||||| |
|
|
| T |
33286050 |
tttacttgaatttaaaagattgcaaaaatcttgtaagcatacccaacaacatattcggtctaagctctcttaaatatctatatatg |
33285965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 22 - 439
Target Start/End: Complemental strand, 33263434 - 33263009
Alignment:
| Q |
22 |
acaactatggaaaaacaagaaggtacctataaattct---attattaatgtttatc---ttagaaatataaacaaattcaaaacaattctcttaaaatca |
115 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| ||||||||| || ||| |||||||||||| ||||||| |||||||||||||| ||||| |
|
|
| T |
33263434 |
acaactatggaaaaacaagaaggtac-tataaattctcttattattaatattcatcatcttagaaatataaccaaattcgaaacaattctcttataatca |
33263336 |
T |
|
| Q |
116 |
atgtaatggttctatttttgttattttttcatgtca--gtatcttcccaatttgagaagattgggtctaagttactccagaaaactagtaaagattgtag |
213 |
Q |
| |
|
| ||||||| ||||||||| || ||| ||||||||| |||||| ||||||||||||| ||||| ||||||| |||||| | |||| |||||| ||| |
|
|
| T |
33263335 |
aagtaatggctctatttttattgtttattcatgtcacagtatctgcccaatttgagaacattggatctaagtcactccatcgagctagaaaagataatag |
33263236 |
T |
|
| Q |
214 |
attttggagagttcccgaatcttgagtggttaaatttggaagggtgtaaaaatcttgtggagttggatccatctattggacttctaagaaagcttgttta |
313 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
33263235 |
attttggagagttcccaaatcttgagtggttaaatttggaaggatgtacaaatcttgttgagttggatccatctattggacttctaagaaatcttgttta |
33263136 |
T |
|
| Q |
314 |
cttgaatttagaagattgcaaaaatc-tacaagcatacccaacaacatatttgatctttgctctcttgaagatctaaatatgcgtggttgttctaaagtg |
412 |
Q |
| |
|
||||||||||||| ||||| | || | | ||||||||| |||| |||||| | ||| |||||||||||||||||||||| || | ||||| |||||| |
|
|
| T |
33263135 |
cttgaatttagaaaattgctataaccttgtaagcataccgaacaccatattcggtctgggctctcttgaagatctaaatatcagttgctgttccaaagtg |
33263036 |
T |
|
| Q |
413 |
tttaacaatccaatgcatttgaagaag |
439 |
Q |
| |
|
|||||||| ||||| || ||| ||||| |
|
|
| T |
33263035 |
tttaacaaaccaatacacttggagaag |
33263009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 117 - 416
Target Start/End: Complemental strand, 33388767 - 33388467
Alignment:
| Q |
117 |
tgtaatggttctatttttgttattttttcatgtcagtatcttcccaatttgagaagattgggtctaagttactccagaaaactagtaaagattgtagatt |
216 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||| |||||| ||||||| |
|
|
| T |
33388767 |
tgtaatggttctatttttgttgttttttcatgtcagtatcttcccaatttgagaagattggatctaagacactccagaaatctagaaaagatagtagatt |
33388668 |
T |
|
| Q |
217 |
ttggagagttcccgaatcttgagtggttaaatttggaagggtgtaaaaatcttgtggagttggatccatctattggacttctaagaaagcttgtttactt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| || ||||| ||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33388667 |
ttggagagttcccgaatcttgagtggttaaatttggaattatgtgcgaaccttgttgagttagatccatctattggacttctaagaaagcttgtttactt |
33388568 |
T |
|
| Q |
317 |
gaatttagaagattgcaaaaatcta-caagcatacccaacaacatatttgatctttgctctcttgaagatctaaatatgcgtggttgttctaaagtgttt |
415 |
Q |
| |
|
|||||| |||| |||| ||||||| |||||||||||||||||||| | |||| |||||||||||||||||||||| |||||||||| |||| |||| |
|
|
| T |
33388567 |
gaatttggaaggttgcgtaaatctagtaagcatacccaacaacatatccggtcttagctctcttgaagatctaaatatatgtggttgttccaaagcgttt |
33388468 |
T |
|
| Q |
416 |
a |
416 |
Q |
| |
|
| |
|
|
| T |
33388467 |
a |
33388467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 23 - 439
Target Start/End: Original strand, 31562100 - 31562521
Alignment:
| Q |
23 |
caactatggaaaaacaagaaggtacctataaattct---attattaatgtttatcttagaaatataaacaaattcaaaacaattctcttaaaatcaatgt |
119 |
Q |
| |
|
|||||||||| |||||||||||||| | |||||| | ||||||| | ||||||||||| |||||||||||| |||||||| |||| |||||| || |
|
|
| T |
31562100 |
caactatggacaaacaagaaggtac-tgtaaattatcttattattactaattatcttagaactataaacaaattagaaacaattatcttttaatcaaagt |
31562198 |
T |
|
| Q |
120 |
aatggttctatttttgttattttttcatgtca--gtatcttcccaatttgagaagattgggtctaagttactccagaaaactagtaaagattgtagattt |
217 |
Q |
| |
|
||||| |||||||||||| ||||| |||||| ||||||||||||||| |||| ||||| ||||||| |||||| ||| || |||||||| ||||||| |
|
|
| T |
31562199 |
aatggctctatttttgtttgttttttatgtcacagtatcttcccaatttaagaaaattggatctaagtcactccataaatcttgtaaagataatagattt |
31562298 |
T |
|
| Q |
218 |
tggagagttcccgaatcttgagtggttaaatttggaagggtgtaaaaatcttgtggagttggatccatctattggacttctaagaaagcttgtttacttg |
317 |
Q |
| |
|
||||| ||||||||||||||||||| ||| |||||||| |||| ||| ||||||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
31562299 |
tggagcgttcccgaatcttgagtggctaagtttggaagaatgtataaaccttgtggagttggatccatctattggacttctagaaaagctttcttacttg |
31562398 |
T |
|
| Q |
318 |
aatttagaagattgcaaaaatct-acaagcatacccaacaacatatttgatctttgctctcttgaagatctaaatatgcgtggttgttctaaagtgttta |
416 |
Q |
| |
|
|||||||| | ||| | | ||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
31562399 |
aatttagacggctgctatagtctggaaagcatacccaacaacatattcagtcttagctctcttgaagatctaaatatgcgtggctgttccaaagtgtttg |
31562498 |
T |
|
| Q |
417 |
acaatccaatgcatttgaagaag |
439 |
Q |
| |
|
| |||||||||||||||||||| |
|
|
| T |
31562499 |
atgatccaatgcatttgaagaag |
31562521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 20 - 425
Target Start/End: Complemental strand, 33359514 - 33359108
Alignment:
| Q |
20 |
aaacaactatggaaaaacaagaaggtacctataaattct---attattaatgtttatcttagaaatataaacaaattcaaaacaattctcttaaaatcaa |
116 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||| |||| |||| |||| |||| |||||| |
|
|
| T |
33359514 |
aaacaactatggaaaaacaagaaggtaa-tataaattctcttattattaatgtttattttagaaatataaaccaattgaaaataattatcttttaatcaa |
33359416 |
T |
|
| Q |
117 |
tgtaatggttctatttttgttattttttcatgt--cagtatcttcccaatttgagaagattgggtctaagttactccagaaaactagtaaagattgtaga |
214 |
Q |
| |
|
| ||| | |||| ||||||| ||||||||| |||||||||||||||||||||| ||||| ||||||| |||||| | | |||| |||||| ||| |
|
|
| T |
33359415 |
agcaat-gctctagttttgtt-ggttttcatgtcacagtatcttcccaatttgagaacattggatctaagtaactccaaagagctagaaaagataacaga |
33359318 |
T |
|
| Q |
215 |
ttttggagagttcccgaatcttgagtggttaaatttggaagggtgtaaaaatcttgtggagttggatccatctattggacttctaagaaagcttgtttac |
314 |
Q |
| |
|
||||| ||||||||||||||||| | |||||||| |||| ||| ||| ||||||||||||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
33359317 |
ttttg--gagttcccgaatcttgaaaagctaaatttgaaaggatgtgtaaaacttgtggagttggatccatctcttggacttctaaaaaagcttgtttac |
33359220 |
T |
|
| Q |
315 |
ttgaatttagaagattgcaaaaatcta-caagcatacccaacaacatatttgatctttgctctcttgaagatctaaatatgcgtggttgttctaaagtgt |
413 |
Q |
| |
|
||||| ||| |||||| |||||||||| ||||||||||||||||||||||| |||| ||||||||||||||| ||||||| | |||||||| ||||||| |
|
|
| T |
33359219 |
ttgaacttaaaagattacaaaaatctagtaagcatacccaacaacatatttggtcttagctctcttgaagatcaaaatatgtgcggttgttccaaagtgt |
33359120 |
T |
|
| Q |
414 |
ttaacaatccaa |
425 |
Q |
| |
|
|| || |||||| |
|
|
| T |
33359119 |
ttgactatccaa |
33359108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 73 - 434
Target Start/End: Complemental strand, 33410703 - 33410342
Alignment:
| Q |
73 |
tcttagaaatataaacaaattcaaaacaattctcttaaaatcaatgtaatggttctatttttgttattttttcatgtca--gtatcttcccaatttgaga |
170 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||| |||||| |||||| |||||||||||| ||||||||||| |||| |||||||||||| | |
|
|
| T |
33410703 |
tcttagagatataaacaaattcaaaacaattctgttataatcaaagtaatgtctctatttttgtttgcttttcatgtcacagtattttcccaatttgaaa |
33410604 |
T |
|
| Q |
171 |
agattgggtctaagttactccagaaaactagtaaagattgtagattttggagagttcccgaatcttgagtggttaaatttggaagggtgtaaaaatcttg |
270 |
Q |
| |
|
||||| ||||||| |||||| || ||| |||||| |||||||||||||||||||||||||||||| ||||||||||||| | ||| |||| |||| |
|
|
| T |
33410603 |
gcattggatctaagtgactccaaaa---tagaaaagataatagattttggagagttcccgaatcttgagtcgttaaatttggaaagatgtgaaaaacttg |
33410507 |
T |
|
| Q |
271 |
tggagttggatccatctattggacttctaagaaagcttgtttacttgaatttagaagattgcaaaaatcta-caagcatacccaacaacatatttgatct |
369 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||||||||||||||| || |||||| |||| || |||||||||||||| |||||| ||| |
|
|
| T |
33410506 |
tggagttggattcatcgattggacttctaagaaagcttgtttacttgaatttggactattgcataaatttagtaagcatacccaacagcatattctgtct |
33410407 |
T |
|
| Q |
370 |
ttgctctcttgaagatctaaatatgcgtggttgttctaaagtgtttaacaatccaatgcatttga |
434 |
Q |
| |
|
| ||||||||||||||||| ||||| |||| ||||| ||||||||||||||| ||| | |||||| |
|
|
| T |
33410406 |
tagctctcttgaagatctatatatgtgtggctgttccaaagtgtttaacaattcaaggaatttga |
33410342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 15 - 439
Target Start/End: Complemental strand, 9167570 - 9167147
Alignment:
| Q |
15 |
acatcaaacaactatggaaaaacaagaaggtacctataaattctattattaat---gtttatcttagaaatataaacaaattcaaaacaattctcttaaa |
111 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||| |||||| ||| |||||| | |||||| |||||||||||||||||||| |||||||| ||||| | |
|
|
| T |
9167570 |
acattaaacaactatggaaaaacaaaaaggtac-tataaactctcttattattaccgtttattttagaaatataaacaaattcgaaacaattttcttaca |
9167472 |
T |
|
| Q |
112 |
atcaatgtaatggttctatttttgttattttttcatgtca--gtatcttcccaatttgagaagattgggtctaagttactccagaaaactagtaaagatt |
209 |
Q |
| |
|
||||| ||||||| |||||||||||| |||||||||||| || |||| | | || ||||| |||||| |||||| || ||||||||||| |
|
|
| T |
9167471 |
atcaaagtaatggctctatttttgttggtttttcatgtcacggtttcttaacca------aatattggatctaaggtactcccgagtgctagtaaagata |
9167378 |
T |
|
| Q |
210 |
gtagattttggagagttcccgaatcttgagtggttaaatttggaagggtgtaaaaatcttgtggagttggatccatctattggacttctaagaaagcttg |
309 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||| |||||||||| ||| ||| ||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
9167377 |
ctagattttggagggtttccgaatcttgagtggttagatttggaaggatgtgtaaaacttgtggagttggatccatctcttggacttctaagaaagcttg |
9167278 |
T |
|
| Q |
310 |
tttacttgaatttagaagattgcaaaaatct-acaagcatacccaacaacatatttgatctttgctctcttgaagatctaaatatgcgtggttgttctaa |
408 |
Q |
| |
|
||||||||||| || ||||||| |||||| | ||| ||||||||||||||||| | |||| |||||||| |||||||||||||| |||| ||||| || |
|
|
| T |
9167277 |
tttacttgaatgtaaaagattgtggaaatctaataagaatacccaacaacatattcggtcttagctctcttaaagatctaaatatgtgtggctgttccaa |
9167178 |
T |
|
| Q |
409 |
agtgtttaacaatccaatgcatttgaagaag |
439 |
Q |
| |
|
| ||||| || || ||| ||||||||||||| |
|
|
| T |
9167177 |
attgtttgacgattcaaggcatttgaagaag |
9167147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 150 - 420
Target Start/End: Original strand, 33644010 - 33644281
Alignment:
| Q |
150 |
cagtatcttcccaatttgagaagattgggtctaagttactccagaaaactagtaaagattgtagattttggagagttcccgaatcttgagtggttaaatt |
249 |
Q |
| |
|
||||||||||||||| |||||||||||| | ||||| | || ||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33644010 |
cagtatcttcccaatctgagaagattggatttaagtgattctagaaagctagaaaagataatagattttggagagttcccgaatcttgagtggttaaatt |
33644109 |
T |
|
| Q |
250 |
tggaagggtgtaaaaatcttgtggagttggatccatctattggacttctaagaaagcttgtttacttgaatttagaagattgcaaaaatct-acaagcat |
348 |
Q |
| |
|
||||||| || ||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||| || ||||||| ||||||| |||||| |
|
|
| T |
33644110 |
tggaaggatgcgtaaaccttgtggagttggatttatctattggacttttaagaaagcttgtttacttgaatgtaaaagattgtgaaaatctggtaagcat |
33644209 |
T |
|
| Q |
349 |
acccaacaacatatttgatctttgctctcttgaagatctaaatatgcgtggttgttctaaagtgtttaacaa |
420 |
Q |
| |
|
||||||||||||||| |||| |||||||| ||||||||||| || |||||||||| |||||||||||||| |
|
|
| T |
33644210 |
acccaacaacatattcagtcttagctctcttcaagatctaaatttgggtggttgttccaaagtgtttaacaa |
33644281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 152 - 421
Target Start/End: Original strand, 28869610 - 28869879
Alignment:
| Q |
152 |
gtatcttcccaatttgagaagattgggtctaagttactccagaaaactagtaaagattgtagattttggagagttcccgaatcttgagtggttaaatttg |
251 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||| ||||||| || |||| |||||| ||||||||||||||||||| ||||||||| | |||| ||| |
|
|
| T |
28869610 |
gtatcttcccaatttgagaacattgcatctaagtcactccagcaatctagaaaagataatagattttggagagttcccaaatcttgagaagctaaagttg |
28869709 |
T |
|
| Q |
252 |
gaagggtgtaaaaatcttgtggagttggatccatctattggacttctaagaaagcttgtttacttgaatttagaagattgcaaaaatcta-caagcatac |
350 |
Q |
| |
|
||| ||||| ||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| | | |||| | ||| || ||| || |
|
|
| T |
28869710 |
aaagagtgtataaaccttgttgagttggatccatctattggacttctaagaaagcttgtatacttgaatttaaacggttgctataatatagtaagtgta- |
28869808 |
T |
|
| Q |
351 |
ccaacaacatatttgatctttgctctcttgaagatctaaatatgcgtggttgttctaaagtgtttaacaat |
421 |
Q |
| |
|
||||||||||||| | |||| |||||||||||||||||||||| ||| ||||| ||||||||||||||| |
|
|
| T |
28869809 |
ccaacaacatattcggtcttaactctcttgaagatctaaatatgtctggctgttccaaagtgtttaacaat |
28869879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 72 - 322
Target Start/End: Complemental strand, 33399771 - 33399519
Alignment:
| Q |
72 |
atcttagaaatataaacaaattcaaaacaattctcttaaaatcaatgtaatggttctatttttgttattttttcatgtca--gtatcttcccaatttgag |
169 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||| |||||| |||||| ||| ||||| || ||| |||||||| |||||||| ||||||| | |
|
|
| T |
33399771 |
atcttagaaatataaacaaattcgaaacaattcttttataatcaaagtaatgtctctgtttttattgtttaatcatgtcacagtatcttcgcaatttgcg |
33399672 |
T |
|
| Q |
170 |
aagattgggtctaagttactccagaaaactagtaaagattgtagattttggagagttcccgaatcttgagtggttaaatttggaagggtgtaaaaatctt |
269 |
Q |
| |
|
|| ||||| ||||| || | ||| |||| |||||| ||||||||||||||||||| ||||||||||||||| |||||||| ||||| || ||| |
|
|
| T |
33399671 |
aaaattggatctaatgggttcaataaatctagaaaagataatagattttggagagttcccaaatcttgagtggttagatttggaattatgtaagaacctt |
33399572 |
T |
|
| Q |
270 |
gtggagttggatccatctattggacttctaagaaagcttgtttacttgaattt |
322 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33399571 |
gttgagttggatccatctattggacttctaagaaagcttgtttacttgaattt |
33399519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 246 - 421
Target Start/End: Complemental strand, 33399523 - 33399347
Alignment:
| Q |
246 |
aatttggaagggtgtaaaaatcttgtggagttggatccatctattggacttctaagaaagcttgtttacttgaatttagaagattgcaaaaatct-acaa |
344 |
Q |
| |
|
||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||| ||||||| || |
|
|
| T |
33399523 |
aatttgggaggatgtaaaaaacttgtggagttggatccatctattggacttctaagaaagcttgtttgcttgaatgtaaaagattgtgaaaatctggtaa |
33399424 |
T |
|
| Q |
345 |
gcatacccaacaacatatttgatctttgctctcttgaagatctaaatatgcgtggttgttctaaagtgtttaacaat |
421 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||| ||||||||||| ||| ||||| ||||||||||||||| |
|
|
| T |
33399423 |
gcatacccaacaacatattcgatcttagctctcttgaatatctaaatatgaatggctgttccaaagtgtttaacaat |
33399347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 33388846 - 33388768
Alignment:
| Q |
14 |
gacatcaaacaactatggaaaaacaagaaggtacctataaattctattattaatgtttatcttagaaatataaacaaatt |
93 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
33388846 |
gacatcaaacaactatggaagaacaagaaggtat-tatacatttgattattaatgtttatcttagaaatataaacaaatt |
33388768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 33401424 - 33401375
Alignment:
| Q |
15 |
acatcaaacaactatggaaaaacaagaaggtacctataaattctattatta |
65 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
33401424 |
acattaaacaactatggaaaaacaagaaggta-ctataaattctcttatta |
33401375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 33410740 - 33410701
Alignment:
| Q |
18 |
tcaaacaactatggaaaaacaagaaggtacctataaattct |
58 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
33410740 |
tcaaacaactatggaaaagcaagaaggta-ctataaattct |
33410701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 26 - 434
Target Start/End: Original strand, 17440117 - 17440524
Alignment:
| Q |
26 |
ctatggaaaaacaagaaggtacctataaattctattattaat----gtttatcttagaaatataaacaaattcaaaacaattctcttaaaatcaatgtaa |
121 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||||||| ||||||||| ||||||||||||||||| |||||||| ||||| ||||||||||| |
|
|
| T |
17440117 |
ctatggaaaaacaagaaggtacc-ataaattctcttattaattaatgtttatctttgaaatataaacaaattcgaaacaattttcttataatcaatgtaa |
17440215 |
T |
|
| Q |
122 |
tggttctatttttgttattttttcatgtcagtatcttcccaatttgagaagattgggtctaagttactccagaaaactagtaaagattgtagattttgga |
221 |
Q |
| |
|
||| ||||||||| || | | ||| |||||||||||||||||||||||||||| ||||||| |||| ||||| |||| |||||| | ||||||||| |
|
|
| T |
17440216 |
tggctctatttttttt--tatgtca---cagtatcttcccaatttgagaagattggatctaagtgactctagaaagctagaaaagataatggattttgga |
17440310 |
T |
|
| Q |
222 |
gagttcccgaatcttgagtggttaaatttggaagggtgtaaaaatcttgtggagttggatccatctattggacttctaagaaagcttgtttacttgaatt |
321 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||| ||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
17440311 |
gagttcccaaatcttgagtggttaaatttggaaggatgtgaaagacttgtggaattggatccatcaattggacttctaagaaagcttgtttacttgaact |
17440410 |
T |
|
| Q |
322 |
tagaagattgcaaaaatcta-caagcatacccaacaacatatttgatctttgctctcttgaagatctaaatatgcgtggttgttctaaagtgtttaacaa |
420 |
Q |
| |
|
|| |||||||| | |||||| ||||||||||||||||||||| |||| ||||||||||| ||||||||||||| |||||| |||||||||| || |
|
|
| T |
17440411 |
taaaagattgctataatctagtaagcatacccaacaacatattctgtcttagctctcttgaatatctaaatatgcgatgttgtttcaaagtgtttacaaa |
17440510 |
T |
|
| Q |
421 |
tccaatgcatttga |
434 |
Q |
| |
|
| ||| |||||||| |
|
|
| T |
17440511 |
ttcaaggcatttga |
17440524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1408 (Bit Score: 153; Significance: 7e-81; HSPs: 2)
Name: scaffold1408
Description:
Target: scaffold1408; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 82 - 394
Target Start/End: Complemental strand, 1387 - 1072
Alignment:
| Q |
82 |
tataaacaaattcaaaacaattctcttaaaatcaatgtaatggttctatttttgttattttttcatgtca--gtatcttcccaatttgagaagattgggt |
179 |
Q |
| |
|
||||||||||||||||| |||||||||| |||| | |||||| ||||||||||| |||||||||||| | |||||||||||||||||||||||| | |
|
|
| T |
1387 |
tataaacaaattcaaaaaaattctcttacaatcgaagtaatgaccctatttttgttggtttttcatgtcacagcatcttcccaatttgagaagattggat |
1288 |
T |
|
| Q |
180 |
ctaagttactccagaaaactagtaaagattgtagattttggagagttcccgaatcttgagtggttaaatttggaagggtgtaaaaatcttgtggagttgg |
279 |
Q |
| |
|
|||||| |||||| || |||| |||||| | |||||||||| |||| || |||||||||||||||||||||||| | |||| ||| ||||||||||||| |
|
|
| T |
1287 |
ctaagtgactccaagaagctagaaaagatagaagattttggacagtttcctaatcttgagtggttaaatttggaaagatgtataaaacttgtggagttgg |
1188 |
T |
|
| Q |
280 |
atccatctattggacttctaagaaagcttgtttacttgaatttagaagattgcaaaaatcta-caagcatacccaacaacatatttgatctttgctctct |
378 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||| ||||||||||||||||||||| | |||| ||||||| |
|
|
| T |
1187 |
atccatctattggacttctaagaaagcttgtttacttgaatttagagcgttgctataatctagtaagcatacccaacaacatattcggtcttagctctct |
1088 |
T |
|
| Q |
379 |
tgaagatctaaatatg |
394 |
Q |
| |
|
| || ||||||||||| |
|
|
| T |
1087 |
taaatatctaaatatg |
1072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1408; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 1427 - 1390
Alignment:
| Q |
20 |
aaacaactatggaaaaacaagaaggtacctataaattct |
58 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1427 |
aaacaactatggaaaaacaagaaggta-ctataaattct |
1390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 153; Significance: 7e-81; HSPs: 2)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 82 - 394
Target Start/End: Complemental strand, 7133 - 6818
Alignment:
| Q |
82 |
tataaacaaattcaaaacaattctcttaaaatcaatgtaatggttctatttttgttattttttcatgtca--gtatcttcccaatttgagaagattgggt |
179 |
Q |
| |
|
||||||||||||||||| |||||||||| |||| | |||||| ||||||||||| |||||||||||| | |||||||||||||||||||||||| | |
|
|
| T |
7133 |
tataaacaaattcaaaaaaattctcttacaatcgaagtaatgaccctatttttgttggtttttcatgtcacagcatcttcccaatttgagaagattggat |
7034 |
T |
|
| Q |
180 |
ctaagttactccagaaaactagtaaagattgtagattttggagagttcccgaatcttgagtggttaaatttggaagggtgtaaaaatcttgtggagttgg |
279 |
Q |
| |
|
|||||| |||||| || |||| |||||| | |||||||||| |||| || |||||||||||||||||||||||| | |||| ||| ||||||||||||| |
|
|
| T |
7033 |
ctaagtgactccaagaagctagaaaagatagaagattttggacagtttcctaatcttgagtggttaaatttggaaagatgtataaaacttgtggagttgg |
6934 |
T |
|
| Q |
280 |
atccatctattggacttctaagaaagcttgtttacttgaatttagaagattgcaaaaatcta-caagcatacccaacaacatatttgatctttgctctct |
378 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||| ||||||||||||||||||||| | |||| ||||||| |
|
|
| T |
6933 |
atccatctattggacttctaagaaagcttgtttacttgaatttagagcgttgctataatctagtaagcatacccaacaacatattcggtcttagctctct |
6834 |
T |
|
| Q |
379 |
tgaagatctaaatatg |
394 |
Q |
| |
|
| || ||||||||||| |
|
|
| T |
6833 |
taaatatctaaatatg |
6818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 7173 - 7136
Alignment:
| Q |
20 |
aaacaactatggaaaaacaagaaggtacctataaattct |
58 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
7173 |
aaacaactatggaaaaacaagaaggta-ctataaattct |
7136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 96; Significance: 7e-47; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 214 - 424
Target Start/End: Original strand, 31498525 - 31498736
Alignment:
| Q |
214 |
attttggagagttcccgaatcttgagtggttaaatttggaagggtgtaaaaatcttgtggagttggatccatctattggacttctaagaaagcttgttta |
313 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||| ||||||| ||||||||| | || ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
31498525 |
attttggagagttcccaaatcttgagcacttaaatctggaaggatgtaaaaatttgttgcggttggatccatctattggacttctaagaaagattgtttc |
31498624 |
T |
|
| Q |
314 |
cttgaatttagaagattgcaaaaatc-tacaagcatacccaacaacatatttgatctttgctctcttgaagatctaaatatgcgtggttgttctaaagtg |
412 |
Q |
| |
|
|||||||||| |||||||||| |||| | ||||||||||||||||||||||| ||| ||| |||| |||||||||||||| |||| ||||| ||||| |
|
|
| T |
31498625 |
cttgaatttaaaagattgcaagaatcttgtaagcatacccaacaacatatttggtctcagctttcttaaagatctaaatatgtgtgggtgttccgaagtg |
31498724 |
T |
|
| Q |
413 |
tttaacaatcca |
424 |
Q |
| |
|
||||||| |||| |
|
|
| T |
31498725 |
tttaacattcca |
31498736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 150 - 393
Target Start/End: Original strand, 31503574 - 31503818
Alignment:
| Q |
150 |
cagtatcttcccaatttgagaagattgggtctaagttactccagaaaactagtaaagattgtagattttggagagttcccgaatcttgagtggttaaatt |
249 |
Q |
| |
|
|||||||| | ||||||||||| |||| |||||| |||||| ||| || ||||||| | ||||||||||||||||||| |||||| || || || |
|
|
| T |
31503574 |
cagtatctgcgcaatttgagaaatttggatctaagccactccaaaaatttaataaagatgccacattttggagagttcccgaaccttgagcggctagatc |
31503673 |
T |
|
| Q |
250 |
tggaagggtgtaaaaatcttgtggagttggatccatctattggacttctaagaaagcttgtttacttgaatttagaagattgcaaaaatct-acaagcat |
348 |
Q |
| |
|
||||||| |||| ||| |||||| || | |||||||||||||| ||||||| |||||||||||||||||| || |||| |||||| || | | |||| | |
|
|
| T |
31503674 |
tggaaggatgtataaaacttgtgcagatagatccatctattggtcttctaacaaagcttgtttacttgaacttgaaagactgcaaacatataataagcct |
31503773 |
T |
|
| Q |
349 |
acccaacaacatatttgatctttgctctcttgaagatctaaatat |
393 |
Q |
| |
|
|| || ||||||||||| ||| | | |||||| ||||||||||| |
|
|
| T |
31503774 |
actcagcaacatatttggtctcagttgtcttgatgatctaaatat |
31503818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 253 - 438
Target Start/End: Complemental strand, 31157772 - 31157586
Alignment:
| Q |
253 |
aagggtgtaaaaatcttgtggagttggatccatctattggacttctaagaaagcttgtttacttgaatttagaagattgcaaaaatcta-caagcatacc |
351 |
Q |
| |
|
|||| |||| ||| |||||| || | |||||||| ||||| |||||||||||||||||| | |||| || ||||||||||||||||| ||||||||| |
|
|
| T |
31157772 |
aaggctgtataaagcttgtgcagattgatccatcaattggggttctaagaaagcttgttttcatgaaattgaaagattgcaaaaatctagtaagcatacc |
31157673 |
T |
|
| Q |
352 |
caacaacatatttgatctttgctctcttgaagatctaaatatgcgtggttgttctaaagtgtttaacaatccaatgcatttgaagaa |
438 |
Q |
| |
|
||||||||| ||| ||| |||||||| || |||||||| | || ||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
31157672 |
gaacaacatacttggtctcagctctcttaaatatctaaatctttccgggtgttccaaagtgtttaacaatccaaggcatttgaagaa |
31157586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 214 - 335
Target Start/End: Original strand, 31478485 - 31478606
Alignment:
| Q |
214 |
attttggagagttcccgaatcttgagtggttaaatttggaagggtgtaaaaatcttgtggagttggatccatctattggacttctaagaaagcttgttta |
313 |
Q |
| |
|
|||||||||||||||||||||||||| || || || ||||||| |||| ||| |||||| |||||||||||||| || | ||| ||| ||||||||||| |
|
|
| T |
31478485 |
attttggagagttcccgaatcttgagcggctagatctggaaggatgtataaaacttgtgcagttggatccatctcttagtcttttaacgaagcttgttta |
31478584 |
T |
|
| Q |
314 |
cttgaatttagaagattgcaaa |
335 |
Q |
| |
|
||||||||| ||||||||||| |
|
|
| T |
31478585 |
cttgaatttgaaagattgcaaa |
31478606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 126 - 394
Target Start/End: Original strand, 31471898 - 31472169
Alignment:
| Q |
126 |
tctatttttgttattttttcatgtca--gtatcttcccaatttgagaagattgggtctaagttactccagaaaactagtaaagattgtagattttggaga |
223 |
Q |
| |
|
|||||||||||| |||||||||||| |||||| ||||||||||||| |||| |||||| |||||| ||| | ||||||| |||||||||| |
|
|
| T |
31471898 |
tctatttttgttgatttttcatgtcacagtatctgcccaatttgagaaatttggatctaagctactcccaaaatttcataaagatgccgcattttggaga |
31471997 |
T |
|
| Q |
224 |
gttcccgaatcttgagtggttaaatttggaagggtgtaaaaatcttgtggagttggatccatctattggacttctaagaaagcttgtttacttgaattta |
323 |
Q |
| |
|
|||||| ||||||||| || || || ||||||| |||| ||| |||||| |||||||| | |||||| | ||||| | ||||||||| ||||||||||| |
|
|
| T |
31471998 |
gttcccaaatcttgagcggctagatctggaaggatgtataaaacttgtgcagttggattcgtctattaggcttcttacaaagcttgtatacttgaatttg |
31472097 |
T |
|
| Q |
324 |
gaagattgcaaaaatct-acaagcatacccaacaacatatttgatctttgctctcttgaagatctaaatatg |
394 |
Q |
| |
|
| |||||||||| | | | |||| || || ||||||||||| ||| ||| |||||| |||||||||||| |
|
|
| T |
31472098 |
aatgattgcaaaagtataataagcttaatcagcaacatatttggtctgggctgtcttgatgatctaaatatg |
31472169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 212 - 341
Target Start/End: Complemental strand, 31527027 - 31526898
Alignment:
| Q |
212 |
agattttggagagttcccgaatcttgagtggttaaatttggaagggtgtaaaaatcttgtggagttggatccatctattggacttctaagaaagcttgtt |
311 |
Q |
| |
|
|||||| |||||| |||| ||||||||| || ||||| | |||| ||| ||| |||| | || | |||||||||||| | |||||||||| |||||| |
|
|
| T |
31527027 |
agatttcggagagatccctaatcttgagcggctaaatctcaaaggatgtgtaaaacttgagcagatagatccatctattagtgttctaagaaaacttgtt |
31526928 |
T |
|
| Q |
312 |
tacttgaatttagaagattgcaaaaatcta |
341 |
Q |
| |
|
||||||||||| |||||||||||||||||| |
|
|
| T |
31526927 |
tacttgaatttggaagattgcaaaaatcta |
31526898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 214 - 435
Target Start/End: Complemental strand, 31028172 - 31027950
Alignment:
| Q |
214 |
attttggagagttcccgaatcttgagtggttaaatttggaagggtgtaaaaatcttgtggagttggatccatctattggacttctaagaaagcttgttta |
313 |
Q |
| |
|
||||||||||| | || ||||||||| || | ||| | || || ||| |||||||||| | | |||||||||||||| ||||| ||||||||||| | |
|
|
| T |
31028172 |
attttggagaggttccaaatcttgagcggctgaatctcgacggatgtgtaaatcttgtgcaaatagatccatctattggtcttctgagaaagcttgtatt |
31028073 |
T |
|
| Q |
314 |
cttgaatttagaagattgcaaaaatct-acaagcatacccaacaacatatttgatctttgctctcttgaagatctaaat-atgcgtggttgttctaaagt |
411 |
Q |
| |
|
|||||| || || ||||||||||||| | ||||||||| ||||||||||||| ||| ||||||| || |||||||| | | ||| ||||| ||||| |
|
|
| T |
31028072 |
cttgaacttgaaaaattgcaaaaatctaataagcatacctaacaacatatttggtctcacctctcttaaatatctaaatctttcctgg-tgttccaaagt |
31027974 |
T |
|
| Q |
412 |
gtttaacaatccaatgcatttgaa |
435 |
Q |
| |
|
||||| |||| ||| ||||||||| |
|
|
| T |
31027973 |
gtttaccaatacaaggcatttgaa |
31027950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 343 - 438
Target Start/End: Complemental strand, 31032605 - 31032510
Alignment:
| Q |
343 |
aagcatacccaacaacatatttgatctttgctctcttgaagatctaaatatgcgtggttgttctaaagtgtttaacaatccaatgcatttgaagaa |
438 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||| || |||||||| | || ||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
31032605 |
aagcatacccaacaacatatttggtctcacctctcttaaatatctaaatctttccgggtgttccaaagtgtttaacaatccaatgcaattgaagaa |
31032510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 281 - 439
Target Start/End: Complemental strand, 31148842 - 31148683
Alignment:
| Q |
281 |
tccatctattggacttctaagaaagcttgtttacttgaatttagaagattgcaaaaatct-acaagcatacccaacaacatatttgatctttgctctctt |
379 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||||| ||||||||||||| || | || ||||| || || ||||||| ||| |||||||| |
|
|
| T |
31148842 |
tccatctattggggttctaagaaagcttgtttacctgaatttgaaagattgcaaaaaactaataataataccaaaaaatatatttggtctcagctctctt |
31148743 |
T |
|
| Q |
380 |
gaagatctaaatatgcgtggttgttctaaagtgtttaacaatccaatgcatttgaagaag |
439 |
Q |
| |
|
||| ||||||| | || ||||| ||||||||||| ||||||| ||| |||| |||| |
|
|
| T |
31148742 |
gaatgtctaaatctttcggggtgttccaaagtgtttaagaatccaaggcaattgaggaag |
31148683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 343 - 438
Target Start/End: Complemental strand, 31018021 - 31017926
Alignment:
| Q |
343 |
aagcatacccaacaacatatttgatctttgctctcttgaagatctaaatatgcgtggttgttctaaagtgtttaacaatccaatgcatttgaagaa |
438 |
Q |
| |
|
|||||||||||||| |||||||| ||| ||||||| || |||||||| | ||| ||||| |||||||||||| |||||| |||||||||||| |
|
|
| T |
31018021 |
aagcatacccaacagcatatttgttctcacctctcttaaatatctaaatctttctgggtgttccaaagtgtttaactatccaaagcatttgaagaa |
31017926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 211 - 322
Target Start/End: Original strand, 31484303 - 31484414
Alignment:
| Q |
211 |
tagattttggagagttcccgaatcttgagtggttaaatttggaagggtgtaaaaatcttgtggagttggatccatctattggacttctaagaaagcttgt |
310 |
Q |
| |
|
|||||||||||||| |||| ||||||||| ||||||| | ||||| ||| ||| ||||||||| |||||| || |||| | |||| || |||||||| |
|
|
| T |
31484303 |
tagattttggagaggtcccaaatcttgagcggttaaaccttgaaggatgtgtaaaacttgtggagatggatctatttatttgtcttccaaagaagcttgt |
31484402 |
T |
|
| Q |
311 |
ttacttgaattt |
322 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
31484403 |
tttcttgaattt |
31484414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 31158034 - 31157995
Alignment:
| Q |
18 |
tcaaacaactatggaaaaacaagaaggtacctataaattct |
58 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
31158034 |
tcaaacaactatggaaagacaagaaggta-ctataaattct |
31157995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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