View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0493_1D_low_7 (Length: 440)
Name: NF0493_1D_low_7
Description: NF0493_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493_1D_low_7 |
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| [»] scaffold0361 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 240 - 427
Target Start/End: Original strand, 4946892 - 4947079
Alignment:
| Q |
240 |
cttgttttgcggaaatcgccgtgacttttgtgggtgttaagaatacatgacataaagcattttccataaatagttcatattatttcataaataaacaatt |
339 |
Q |
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| T |
4946892 |
cttgttttgcggaaatcgccgtgacttttgtgggtgttaagaatacatgacataaagcattttccataaatagttcatattatttcataaataaacaatt |
4946991 |
T |
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| Q |
340 |
tcataaaatacttgagacacaagttttaattcaatattacctatcccctttctcttttattaaaattttaataaacctctaatgatgt |
427 |
Q |
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| T |
4946992 |
tcataaaatacttgagacacaagttttaattcaatattacctatcccctttctcttttattaaaattttaataaacctctaatgatgt |
4947079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 24 - 161
Target Start/End: Original strand, 4946676 - 4946813
Alignment:
| Q |
24 |
gttttatactttgatcttttgattaattggaaggattaaataggaggatattaatttactcaaaacttttgacacaatgtagaagataatcagtttataa |
123 |
Q |
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| T |
4946676 |
gttttatactttgatcttttgattaattggaaggattaaataggaggatattaatttactcaaaacttttgacagaatgtagaagataatcagtttataa |
4946775 |
T |
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| Q |
124 |
atgttgagcagtgttattcagtacgaataataaacctc |
161 |
Q |
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| T |
4946776 |
atgttgagcagtgttattcagtacgaataataaacctc |
4946813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0361 (Bit Score: 168; Significance: 7e-90; HSPs: 2)
Name: scaffold0361
Description:
Target: scaffold0361; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 244 - 423
Target Start/End: Original strand, 11568 - 11747
Alignment:
| Q |
244 |
ttttgcggaaatcgccgtgacttttgtgggtgttaagaatacatgacataaagcattttccataaatagttcatattatttcataaataaacaatttcat |
343 |
Q |
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| T |
11568 |
ttttgcggaaatcgccgtgacttttgtgggtgttaagaatacatgacataaagcattttccataaatagttcatactatttcataaataaacaatttcat |
11667 |
T |
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| Q |
344 |
aaaatacttgagacacaagttttaattcaatattacctatcccctttctcttttattaaaattttaataaacctctaatg |
423 |
Q |
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| T |
11668 |
aaaatacttgaaacacaagttttaattcaatattacctatcccctttctcttttattaaaactttaataaacctctaatg |
11747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0361; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 24 - 161
Target Start/End: Original strand, 11346 - 11483
Alignment:
| Q |
24 |
gttttatactttgatcttttgattaattggaaggattaaataggaggatattaatttactcaaaacttttgacacaatgtagaagataatcagtttataa |
123 |
Q |
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| T |
11346 |
gttttatactttgatcttttgattaattggaaggattaaataggaggatattaatttactcaagacttttgccagaatgtagaagatgatcagcttataa |
11445 |
T |
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| Q |
124 |
atgttgagcagtgttattcagtacgaataataaacctc |
161 |
Q |
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| T |
11446 |
atattgagcagtgttattcagtacgaataataaacctc |
11483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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