View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0493_1D_low_8 (Length: 357)
Name: NF0493_1D_low_8
Description: NF0493_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493_1D_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 35755702 - 35756036
Alignment:
| Q |
1 |
ctactgcttctctttccacatccagatatagttcagggtcgatagttgcattccaatctacatcatcgatgtatatgttaggatcaggcaatggtatgtc |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
35755702 |
ctactgcttctctttccacatccagatatagttcaggatcaatagttgcattccaatctacatcatcgaggtatatgttaggatcaggcaatggtatgtc |
35755801 |
T |
|
| Q |
101 |
acagggaaggccattgatctcagcccaaaacctgttttttgcattgttgaatgccccttttacagcagagtcatcccagtttaccacattgggatgtaga |
200 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35755802 |
acagggaaggccgttgatctcagcccaaaacctgttttttgcattgttgaatgcctcttttacagcagagtcatcccagtttaccacattgggatgtaga |
35755901 |
T |
|
| Q |
201 |
gacatatacctcttgacttctattagctttcgccatggaactgcaccaatcgaagcacaaaacttcttttcccacaaaggcactgcttgatacctgtgaa |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35755902 |
gacatatacctcttgacttctattagctttcgccatggaactgcaccaatcgaagcacaaaacttcttttcccacaaaggcactgcttgatacctgtgaa |
35756001 |
T |
|
| Q |
301 |
ccaaaaggaatcagatgataattaaagattaacct |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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| T |
35756002 |
ccaaaaggaatcagatgataattaaagattaacct |
35756036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 7 - 285
Target Start/End: Original strand, 35789656 - 35789934
Alignment:
| Q |
7 |
cttctctttccacatccagatatagttcagggtcgatagttgcattccaatctacatcatcgatgtatatgttaggatcaggcaatggtatgtcacaggg |
106 |
Q |
| |
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|||||||||||||||||||||| ||||||| ||||| |||| ||||| |||| |||||| ||||| ||||||||||||||| |||||||||| ||||| |
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|
| T |
35789656 |
cttctctttccacatccagataaagttcagtgtcgacgcttgcgttccagtctatatcatctatgtaaatgttaggatcaggcgatggtatgtcgcaggg |
35789755 |
T |
|
| Q |
107 |
aaggccattgatctcagcccaaaacctgttttttgcattgttgaatgccccttttacagcagagtcatcccagtttaccacattgggatgtagagacata |
206 |
Q |
| |
|
|| | | |||||||||||||| ||||||||||||||||||||||||||| |||| || ||||| || ||||||||||||||||||||||||||| ||||| |
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|
| T |
35789756 |
aatgtcgttgatctcagcccagaacctgttttttgcattgttgaatgcctctttgacggcagaatcgtcccagtttaccacattgggatgtagacacata |
35789855 |
T |
|
| Q |
207 |
tacctcttgacttctattagctttcgccatggaactgcaccaatcgaagcacaaaacttcttttcccacaaaggcactg |
285 |
Q |
| |
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|| ||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
35789856 |
tatttcttgacttctattatctttcgccatggtactgagccaatcgaagcacaaaacttcttttcccacaaaggcactg |
35789934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 4 - 285
Target Start/End: Original strand, 35785801 - 35786082
Alignment:
| Q |
4 |
ctgcttctctttccacatccagatatagttcagggtcgatagttgcattccaatctacatcatcgatgtatatgttaggatcaggcaatggtatgtcaca |
103 |
Q |
| |
|
|||||||||||||||| |||| ||| ||||||| ||| ||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||| || |
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| T |
35785801 |
ctgcttctctttccacctccaaataaagttcagagtcaatacttgcattccaatctacatcgtcgatgtaaatgttaggatcaggcaatggtatgttgca |
35785900 |
T |
|
| Q |
104 |
gggaaggccattgatctcagcccaaaacctgttttttgcattgttgaatgccccttttacagcagagtcatcccagtttaccacattgggatgtagagac |
203 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||| | |||||||||||| ||||| || ||| || |
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| T |
35785901 |
gggaaggccgttgatctcagcccaaaacctgttttttgcattgtcaaatgcctctttgacagcagagtcgttccagtttaccactttggggtgaagacac |
35786000 |
T |
|
| Q |
204 |
atatacctcttgacttctattagctttcgccatggaactgcaccaatcgaagcacaaaacttcttttcccacaaaggcactg |
285 |
Q |
| |
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|||||| | ||| ||||||||| ||||| ||||||||||| ||||| |||| ||||||||||||||||||| ||||||||| |
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| T |
35786001 |
atatacttattgccttctattacctttctccatggaactgaaccaaccgaattacaaaacttcttttcccacgaaggcactg |
35786082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 4 - 285
Target Start/End: Original strand, 35760863 - 35761144
Alignment:
| Q |
4 |
ctgcttctctttccacatccagatatagttcagggtcgatagttgcattccaatctacatcatcgatgtatatgttaggatcaggcaatggtatgtcaca |
103 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||| | | |||||||||||||||||||||| |||| ||| |||||||||||||||||||| || |
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| T |
35760863 |
ctgcttctctttccacatcctgataaagttcagggtccacacttgcattccaatctacatcatcaatgtgagtgtcgggatcaggcaatggtatgtcgca |
35760962 |
T |
|
| Q |
104 |
gggaaggccattgatctcagcccaaaacctgttttttgcattgttgaatgccccttttacagcagagtcatcccagtttaccacattgggatgtagagac |
203 |
Q |
| |
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||||| | ||||||||||||||||| |||||||||||||||| |||||| |||| ||||||||||| ||||||||||||||||||||||| ||| || |
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| T |
35760963 |
gggaaattcgttgatctcagcccaaaatctgttttttgcattgtcaaatgcctctttgacagcagagtcgtcccagtttaccacattgggatgcagatac |
35761062 |
T |
|
| Q |
204 |
atatacctcttgacttctattagctttcgccatggaactgcaccaatcgaagcacaaaacttcttttcccacaaaggcactg |
285 |
Q |
| |
|
|||||| ||||| ||||||||| ||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||| |
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| T |
35761063 |
atatacttcttgccttctattacctttcgccatggaactgagccaaccgattcacaaaacttcttttcccacaaaggcactg |
35761144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 4 - 285
Target Start/End: Original strand, 35799296 - 35799577
Alignment:
| Q |
4 |
ctgcttctctttccacatccagatatagttcagggtcgatagttgcattccaatctacatcatcgatgtatatgttaggatcaggcaatggtatgtcaca |
103 |
Q |
| |
|
|||||||| ||||||||||| ||| ||||||| |||| | ||||||| ||||||||||||| ||||| |||||||||| |||||||||||||| || |
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| T |
35799296 |
ctgcttctatttccacatcccgatgaagttcagaatcgacacttgcatttgaatctacatcatctatgtaaatgttaggattgggcaatggtatgtccca |
35799395 |
T |
|
| Q |
104 |
gggaaggccattgatctcagcccaaaacctgttttttgcattgttgaatgccccttttacagcagagtcatcccagtttaccacattgggatgtagagac |
203 |
Q |
| |
|
||||| ||| ||||||||||||||| |||||||||||||||||| ||||||| |||| ||||||||||| |||||||||||||| |||||||| | | || |
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|
| T |
35799396 |
gggaatgccgttgatctcagcccaatacctgttttttgcattgtcgaatgcctctttgacagcagagtcgtcccagtttaccactttgggatgcatatac |
35799495 |
T |
|
| Q |
204 |
atatacctcttgacttctattagctttcgccatggaactgcaccaatcgaagcacaaaacttcttttcccacaaaggcactg |
285 |
Q |
| |
|
|| ||||||||| ||||||||||||||||||||||||||| || | |||||||||||||| |||||||||||||||||||| |
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|
| T |
35799496 |
atgtacctcttgtcttctattagctttcgccatggaactgagcccaccgaagcacaaaactgcttttcccacaaaggcactg |
35799577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 4 - 285
Target Start/End: Original strand, 35766346 - 35766627
Alignment:
| Q |
4 |
ctgcttctctttccacatccagatatagttcagggtcgatagttgcattccaatctacatcatcgatgtatatgttaggatcaggcaatggtatgtcaca |
103 |
Q |
| |
|
||||||| ||||||||||| ||||| |||| |||||||| | |||| | |||| ||||| ||||||| |||||||||||||||||||||||||| || |
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|
| T |
35766346 |
ctgcttcactttccacatcaagataaagttgagggtcgacacttgcggttgaatccacatcgtcgatgtgaatgttaggatcaggcaatggtatgtcgca |
35766445 |
T |
|
| Q |
104 |
gggaaggccattgatctcagcccaaaacctgttttttgcattgttgaatgccccttttacagcagagtcatcccagtttaccacattgggatgtagagac |
203 |
Q |
| |
|
||||| ||| ||||| ||||||||||||||||| || ||||||| ||||||| |||| ||||||||||| |||||||| | ||| | ||||| ||| || |
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|
| T |
35766446 |
gggaaagccgttgatatcagcccaaaacctgttcttagcattgtcgaatgcctctttgacagcagagtcgtcccagttgatcactgttggatgcagaaac |
35766545 |
T |
|
| Q |
204 |
atatacctcttgacttctattagctttcgccatggaactgcaccaatcgaagcacaaaacttcttttcccacaaaggcactg |
285 |
Q |
| |
|
||| |||||||| ||||||||| ||| ||| | ||||| |||| || ||||||||||||||| |||||| ||||||||| |
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|
| T |
35766546 |
ataaacctcttgccttctattaccttcttccacgaaactgagccaaccgtagcacaaaacttcttctcccaccaaggcactg |
35766627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 81 - 178
Target Start/End: Original strand, 20615091 - 20615188
Alignment:
| Q |
81 |
ggatcaggcaatggtatgtcacagggaaggccattgatctcagcccaaaacctgttttttgcattgttgaatgccccttttacagcagagtcatccca |
178 |
Q |
| |
|
|||||||| || ||||||| || |||||||||||||| || ||||||||||| |||||||||||| ||||| |||| ||||||| |||||||| |
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| T |
20615091 |
ggatcaggaaaaggtatgttgcaaggaaggccattgatatctgcccaaaacctactttttgcattgtcaaatgcttctttagcagcagaatcatccca |
20615188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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