View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0493_1D_low_9 (Length: 353)

Name: NF0493_1D_low_9
Description: NF0493_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0493_1D_low_9
NF0493_1D_low_9
[»] chr4 (9 HSPs)
chr4 (1-326)||(14178732-14179056)
chr4 (1-326)||(14173978-14174302)
chr4 (1-326)||(28611568-28611892)
chr4 (1-326)||(28606806-28607130)
chr4 (1-326)||(44161627-44161949)
chr4 (2-326)||(11104511-11104829)
chr4 (22-326)||(48826702-48827000)
chr4 (129-299)||(48708086-48708256)
chr4 (121-214)||(24726288-24726381)
[»] chr8 (5 HSPs)
chr8 (1-326)||(12930717-12931040)
chr8 (1-327)||(12935463-12935787)
chr8 (121-191)||(26504985-26505055)
chr8 (123-235)||(15588948-15589060)
chr8 (273-318)||(26504850-26504895)
[»] chr1 (1 HSPs)
chr1 (1-326)||(34907180-34907503)
[»] chr7 (7 HSPs)
chr7 (1-328)||(37040424-37040750)
chr7 (2-326)||(15290273-15290594)
chr7 (21-326)||(12099060-12099361)
chr7 (1-178)||(12082055-12082227)
chr7 (244-326)||(12084669-12084751)
chr7 (121-233)||(2757307-2757418)
chr7 (266-303)||(2757236-2757273)
[»] chr5 (4 HSPs)
chr5 (1-326)||(29106878-29107199)
chr5 (4-326)||(42910993-42911310)
chr5 (144-234)||(38997230-38997320)
chr5 (246-326)||(38994699-38994779)
[»] chr2 (1 HSPs)
chr2 (1-326)||(8539224-8539548)
[»] chr6 (2 HSPs)
chr6 (144-326)||(2100199-2100379)
chr6 (121-151)||(2100723-2100753)
[»] chr3 (3 HSPs)
chr3 (5-105)||(51302206-51302306)
chr3 (244-326)||(51302937-51303019)
chr3 (199-235)||(51302308-51302344)


Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 14178732 - 14179056
Alignment:
Q  1 gggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14178732 gggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgt 14178831  T
Q  101 atctctnnnnnnnnnnnnnnagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagt 200  Q
    ||||||              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  14178832 atctcttgtgtgtgtg----agagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggt 14178927  T
Q  201 attagagggttttccacgttaaatattggtgttca---nnnnnnnngctaccgctgcgctgcaagatccaatctcttttggattttggaattttaattta 297  Q
    |||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  14178928 attagagggttttccacgttaaatattggtgttcattttttttattgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaattta 14179027  T
Q  298 cacttgcgttaagctcgtcgagcccaaca 326  Q
    |||||||||||||||||||||||||||||    
T  14179028 cacttgcgttaagctcgtcgagcccaaca 14179056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 14173978 - 14174302
Alignment:
Q  1 gggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14173978 gggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgt 14174077  T
Q  101 atctctnnnnnnnnnnnnnnagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagt 200  Q
    ||||||              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  14174078 atctcttgtgtgtgtg----agagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggt 14174173  T
Q  201 attagagggttttccacgttaaatattggtgttca---nnnnnnnngctaccgctgcgctgcaagatccaatctcttttggattttggaattttaattta 297  Q
    |||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  14174174 attagagggttttccacgttaaatattggtgttcattttttttatcactaccgctgcgctgcaagatccagtctcttttggattttggaattttaattta 14174273  T
Q  298 cacttgcgttaagctcgtcgagcccaaca 326  Q
    |||||||||||||||||||||||||||||    
T  14174274 cacttgcgttaagctcgtcgagcccaaca 14174302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 28611892 - 28611568
Alignment:
Q  1 gggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28611892 gggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgt 28611793  T
Q  101 atctctnnnnnnnnnnnnnnagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagt 200  Q
    ||||||              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  28611792 atctcttgtgtgtgtg----agagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggt 28611697  T
Q  201 attagagggttttccacgttaaatattggtgttca---nnnnnnnngctaccgctgcgctgcaagatccaatctcttttggattttggaattttaattta 297  Q
    ||||||||||||| |||||||||||||||||||||           |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  28611696 attagagggtttttcacgttaaatattggtgttcattttttttatcgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaattta 28611597  T
Q  298 cacttgcgttaagctcgtcgagcccaaca 326  Q
    |||||||||||||||||||||||||||||    
T  28611596 cacttgcgttaagctcgtcgagcccaaca 28611568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 28607130 - 28606806
Alignment:
Q  1 gggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28607130 gggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgt 28607031  T
Q  101 atctctnnnnnnnnnnnnnnagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagt 200  Q
    ||||||              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  28607030 atctcttgtgtgtgtg----agagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggt 28606935  T
Q  201 attagagggttttccacgttaaatattggtgttca---nnnnnnnngctaccgctgcgctgcaagatccaatctcttttggattttggaattttaattta 297  Q
    ||||||||||||| ||||||||||||||||||| |           |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  28606934 attagagggtttttcacgttaaatattggtgttaattttttttatcgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaattta 28606835  T
Q  298 cacttgcgttaagctcgtcgagcccaaca 326  Q
    |||||||||||||||||||||||||||||    
T  28606834 cacttgcgttaagctcgtcgagcccaaca 28606806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 44161627 - 44161949
Alignment:
Q  1 gggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||    
T  44161627 gggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtcttacgggaaacactatattgt 44161726  T
Q  101 atctctnnnnnnnnnnnnnnagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagt 200  Q
    ||||||              ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  44161727 atctcttgtgtgtgta----agagagtggagagaat--tgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggt 44161820  T
Q  201 attagagggttttccacgttaaatattggtgttca---nnnnnnnngctaccgctgcgctgcaagatccaatctcttttggattttggaattttaattta 297  Q
    |||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44161821 attagagggttttccacgttaaatattggtgttcattttttttatcgctaccgctgcgctgcaagatccaatctcttttggattttggaattttaattta 44161920  T
Q  298 cacttgcgttaagctcgtcgagcccaaca 326  Q
    |||||||||||||||||||||||||||||    
T  44161921 cacttgcgttaagctcgtcgagcccaaca 44161949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 2 - 326
Target Start/End: Original strand, 11104511 - 11104829
Alignment:
Q  2 ggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgta 101  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||| |||||| ||| ||||||||||||||||||||||||||    
T  11104511 ggaaaaatacaccgggtggatatcatctctataacttctaggtgttataaaataatagcatttgaataggagtgggtctcacgggaaacactatattgta 11104610  T
Q  102 tctctnnnnnnnnnnnnnnagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagta 201  Q
    |||||              ||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||||| ||| |||||  ||    
T  11104611 tctct-----ttgtgtgtaagagagtggagagaatattgtaatattcttagatatggtggaatatttttcggagtttgtcccgtgg-tttaccctcgata 11104704  T
Q  202 ttagagggttttccacgttaaatattggtgttcannnnnnnngctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacact 301  Q
    ||||||| ||||| | ||||||||||||||||||        ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11104705 ttagaggattttctatgttaaatattggtgttcatttttatcgctacagctgcgctgcaagatccaatctcttttggattttggaattttaatttacact 11104804  T
Q  302 tgcgttaagctcgtcgagcccaaca 326  Q
    |||||||||||||||||||||||||    
T  11104805 tgcgttaagctcgtcgagcccaaca 11104829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 22 - 326
Target Start/End: Complemental strand, 48827000 - 48826702
Alignment:
Q  22 tatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctctnnnnnnnnnnnnnna 121  Q
    |||||||||||||||||||||||||||||| |||||||||||  ||||| |||   |||||||||||||||||||||||||||||              |    
T  48827000 tatcatctctataacttctaggtgctataaaataatagcattcaaataggagtgaatctcacgggaaacactatattgtatctcttgtgtgtgta----a 48826905  T
Q  122 gagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggttttccacgtta 221  Q
    ||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||| ||||||||||||    
T  48826904 gagagcgaagagaatattgtaatattctttaatatagtggaatatttttcggag-ttgtcccgtgatttttccctcggtattagaggattttccacgtta 48826806  T
Q  222 aatattggtgttc-annnnnnnngctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagc 320  Q
    |||||||||||||          |||||||||||||||||||||||||||||  ||| |||||| |||||||||||||| |||||||||||||||||| |    
T  48826805 aatattggtgttctttttctatcgctaccgctgcgctgcaagatccaatctc--ttgaattttgaaattttaatttacaattgcgttaagctcgtcgatc 48826708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 129 - 299
Target Start/End: Complemental strand, 48708256 - 48708086
Alignment:
Q  129 gagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggttttccacgttaaatattg 228  Q
    ||||||||||||||||||| ||||||||| || ||||||||| |||||||||| ||||||||||| || ||||||| || ||||| || |||||||||||    
T  48708256 gagagaatattgtaatattttttaatataatgaaatattttttggagtttgtcacgtggtttttctcttagtattatagagtttttcatgttaaatattg 48708157  T
Q  229 gtgttcannnnnnnngctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttaca 299  Q
    || || |        || ||| ||||| || ||||| |||| ||||||  |||||||||||||||||||||    
T  48708156 gtatttaattttatcgccaccactgcgttgtaagattcaatttcttttatattttggaattttaatttaca 48708086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 121 - 214
Target Start/End: Complemental strand, 24726381 - 24726288
Alignment:
Q  121 agagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggttttc 214  Q
    ||||| ||||||||||||| | || |||||||||||| ||||||||||||| ||||||||| ||||| ||||||||   ||||||| |||||||    
T  24726381 agagaatggagagaatattattatgttctttaatataatggaatatttttcagagtttgtctcgtggcttttcccttgatattagatggttttc 24726288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 12930717 - 12931040
Alignment:
Q  1 gggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  12930717 gggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaataaaagtaggtctcacgggaaacactatattgt 12930816  T
Q  101 atctctnnnnnnnnnnnnnnagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagt 200  Q
    ||||||              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  12930817 atctcttgtgtgtgtg----agagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggt 12930912  T
Q  201 attagagggttttccacgttaaatattggtgttca--nnnnnnnngctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttac 298  Q
    |||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  12930913 attagagggttttccacgttaaatattggtgttcatttttttatcgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttac 12931012  T
Q  299 acttgcgttaagctcgtcgagcccaaca 326  Q
    ||||||||||||||||||||||||||||    
T  12931013 acttgcgttaagctcgtcgagcccaaca 12931040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 12935463 - 12935787
Alignment:
Q  1 gggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||    
T  12935463 gggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagagtaaaagtaggtctcacgggaaacactatattgt 12935562  T
Q  101 atctctnnnnnnnnnnnnnnagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagt 200  Q
    ||||||              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  12935563 atctcttgtgtgtgtg----agagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggt 12935658  T
Q  201 attagagggttttccacgttaaatattggtgttca--nnnnnnnngctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttac 298  Q
    |||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||| | ||||||| ||||||||||||||||||||    
T  12935659 attagagggttttccacgttaaatattggtgttcatttttttatcgctaccgctgcgctgcaagatccagtttcttttgaattttggaattttaatttac 12935758  T
Q  299 acttgcgttaagctcgtcgagcccaacag 327  Q
    |||||||||||||||||||||||||||||    
T  12935759 acttgcgttaagctcgtcgagcccaacag 12935787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 121 - 191
Target Start/End: Complemental strand, 26505055 - 26504985
Alignment:
Q  121 agagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttt 191  Q
    ||||||| || |||||||||||||||| |||| |||||| |||||||||| ||||||||| | ||||||||    
T  26505055 agagagttgaaagaatattgtaatattttttattatagttgaatattttttggagtttgtactgtggtttt 26504985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 123 - 235
Target Start/End: Original strand, 15588948 - 15589060
Alignment:
Q  123 agagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggttttccacgttaa 222  Q
    |||||||||| ||| |||||||||| ||| ||| |||| |||||||||  ||||||||| | || |||||| |||| || ||||||||||| ||   |||    
T  15588948 agagtggagaaaatgttgtaatattgtttgataaagtgaaatattttttagagtttgtcacttgatttttctctcattaatagagggtttttcaaaataa 15589047  T
Q  223 atattggtgttca 235  Q
    |||||| ||||||    
T  15589048 atattgatgttca 15589060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 318
Target Start/End: Complemental strand, 26504895 - 26504850
Alignment:
Q  273 ttttggattttggaattttaatttacacttgcgttaagctcgtcga 318  Q
    |||||||||||| ||||||||||||||||| | |||| ||||||||    
T  26504895 ttttggattttgaaattttaatttacacttccattaaactcgtcga 26504850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 34907180 - 34907503
Alignment:
Q  1 gggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  34907180 gggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaataaaagtaggtctcacgggaaacactatattgt 34907279  T
Q  101 atctctnnnnnnnnnnnnnnagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagt 200  Q
    ||||||              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  34907280 atctcttgtgtgtgtg----agagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggt 34907375  T
Q  201 attagagggttttccacgttaaatattggtgttca--nnnnnnnngctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttac 298  Q
    |||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  34907376 attagagggttttccacgttaaatattggtgttcatttttttatcgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttac 34907475  T
Q  299 acttgcgttaagctcgtcgagcccaaca 326  Q
    ||||||||||||||||||||||||||||    
T  34907476 acttgcgttaagctcgtcgagcccaaca 34907503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 37040750 - 37040424
Alignment:
Q  1 gggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgt 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  37040750 gggaaaaatacatcgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacggaaaacactatattgt 37040651  T
Q  101 atctctnnnnnnnnnnnnnnagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagt 200  Q
    ||||||              |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  37040650 atctcttgtgtgtgtg----agagagtggagaaaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggt 37040555  T
Q  201 attagagggttttccacgttaaatattggtgttca---nnnnnnnngctaccgctgcgctgcaagatccaatctcttttggattttggaattttaattta 297  Q
    |||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  37040554 attagagggttttccacgttaaatattggtgttcattttttttatcgctaccgctgcgctgcaagatccagtcttttttggattttggaattttaattta 37040455  T
Q  298 cacttgcgttaagctcgtcgagcccaacaga 328  Q
    |||||||||||||||||||||||||||||||    
T  37040454 cacttgcgttaagctcgtcgagcccaacaga 37040424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 2 - 326
Target Start/End: Original strand, 15290273 - 15290594
Alignment:
Q  2 ggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgta 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||  |||||||| |||||| ||| |||||||||| |||||||||||||||    
T  15290273 ggaaaaatacaccgggtgggtatcatctctataacttctaggtgctgaaata--atagcattcgaataggagtgggtctcacgg-aaacactatattgta 15290369  T
Q  102 tctctnnnnnnnnnnnnnnagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagta 201  Q
    |||||              |||||||||||||||||||||||||||||| |||||||||||| || ||| ||||||||||||||||||| | |||| |||    
T  15290370 tctcttgtgtgtgta----agagagtggagagaatattgtaatattcttaaatatagtggaaaatcttttggagtttgtcccgtggtttatacctcggta 15290465  T
Q  202 ttagagggttttccacgttaaatattggtgttca---nnnnnnnngctaccgctgcgctgcaagatccaatctc-ttttggattttggaattttaattta 297  Q
    ||||||||||||||||||||||||||||||||||           ||||  ||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  15290466 ttagagggttttccacgttaaatattggtgttcattttttttatcgctaaggctgcgctgcaagatccaatctctttttggattttgaaattttaattta 15290565  T
Q  298 cacttgcgttaagctcgtcgagcccaaca 326  Q
    || ||||||||||||||||||||||||||    
T  15290566 caattgcgttaagctcgtcgagcccaaca 15290594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 21 - 326
Target Start/End: Original strand, 12099060 - 12099361
Alignment:
Q  21 gtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctctnnnnnnnnnnnnnn 120  Q
    |||||||||||||||||| |||||| ||||| |||||| |||| |||||| |||  |||||||  ||||||| ||||||| |||||                  
T  12099060 gtatcatctctataacttttaggtgttataaaataatatcatttgaataggagtgagtctcactagaaacacaatattgtgtctcttgtgcgtgta---- 12099155  T
Q  121 agagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggttttccacgtt 220  Q
    ||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||| |||||||||| ||   ||||||||||||| |||||     
T  12099156 agagagtggagagaatattgtaatattctttaatatagttgaaattttttcggagtttgtcccttggtttttccttcgtcattagagggtttttcacgta 12099255  T
Q  221 aaatattggtgttcannnnnnnngctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagc 320  Q
    |||||||| | ||||        |||| || || |||||||||||  |||||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  12099256 aaatattgcttttcatttttatcgctatcggtgagctgcaagatcatatctcttttggattttggaattttaatttacactcgcgttaaactcgtcgagc 12099355  T
Q  321 ccaaca 326  Q
    ||||||    
T  12099356 ccaaca 12099361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 12082055 - 12082227
Alignment:
Q  1 gggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgt 100  Q
    |||||||||| | ||||| ||||| |||||||||||||||||| ||||||| |||||| |||| |||||| ||   ||||||   |||||||||||||||    
T  12082055 gggaaaaatatatcgggtaggtattatctctataacttctaggcgctataaaataataacatttgaataggagcgagtctcattagaaacactatattgt 12082154  T
Q  101 atctctnnnnnnnnnnnnnnagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagttt 178  Q
    ||||||              |||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||    
T  12082155 atctct----tttccgtgtaagagagtggagaaaatattgtaatattc-ttaatatagtggaatattttttggagttt 12082227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 244 - 326
Target Start/End: Original strand, 12084669 - 12084751
Alignment:
Q  244 gctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca 326  Q
    ||||||| |||||| ||||||||||| ||| |||||||||| ||||||||||||| || | ||||||||||| ||||||||||    
T  12084669 gctaccgttgcgctacaagatccaatgtctattggattttgaaattttaatttaccctcgtgttaagctcgttgagcccaaca 12084751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 121 - 233
Target Start/End: Complemental strand, 2757418 - 2757307
Alignment:
Q  121 agagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggttttccacgtt 220  Q
    ||||||||||||||||| || |||||| || |||||||||||||| |||||  | |||||| | |||||||||| | || |||| |||| ||| ||  ||    
T  2757418 agagagtggagagaatagtgcaatatttttaaatatagtggaata-ttttcaaaatttgtctcatggtttttccttaagcattaaaggggttttcatatt 2757320  T
Q  221 aaatattggtgtt 233  Q
    |||||||||||||    
T  2757319 aaatattggtgtt 2757307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 303
Target Start/End: Complemental strand, 2757273 - 2757236
Alignment:
Q  266 caatctcttttggattttggaattttaatttacacttg 303  Q
    |||| ||||||| |||||||||||||||||||||||||    
T  2757273 caatttcttttgaattttggaattttaatttacacttg 2757236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 29107199 - 29106878
Alignment:
Q  1 gggaaaaatacaccgggtggg-tatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattg 99  Q
    ||||||||||||  ||||||| |||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||    
T  29107199 gggaaaaatacattgggtggggtatcatctttataacttctaggtgctaaaaaataatagcattagaatagaagtaggtctcacgggaaacactat-ttg 29107101  T
Q  100 tatctctnnnnnnnnnnnnnnagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcag 199  Q
    |||||||              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  29107100 tatctcttgtgtgtgta----agagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcgg 29107005  T
Q  200 tattagagggttttccacgttaaatattggtgttcannnnnnnngctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttaca 299  Q
    ||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  29107004 tattagagggttttccacgttaaatattggtgttcatttttaacgctaccgctgcgctgcaagatccaatcttttttggattttggaattttaatttaca 29106905  T
Q  300 cttgcgttaagctcgtcgagcccaaca 326  Q
    ||||| |||||||| |||| |||||||    
T  29106904 cttgcattaagctcctcgatcccaaca 29106878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 4 - 326
Target Start/End: Complemental strand, 42911310 - 42910993
Alignment:
Q  4 aaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatc 103  Q
    |||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  42911310 aaaaatacactgggtgggtatcatctctataacttcttggtgctataaaataatagcattagaatagaagtaggtctcaagggaaacactatattgtatc 42911211  T
Q  104 tctnnnnnnnnnnnnnnagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtatt 203  Q
    | |              |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  42911210 ttttgtgtgtgtg----agagagtggagagaatattgtaatattcttaaatatagtggaatatttt-cggagtttgtcccgtggtttttccctcggtatt 42911116  T
Q  204 agagggttttccacgttaaatattggtgttcannnnnnnngctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttg 303  Q
    ||||||||||||| ||||||||||||||||||        | | |||||||||||||||||| |||||||||||||||||  ||||||||||| ||||||    
T  42911115 agagggttttccatgttaaatattggtgttcatttttatcgttgccgctgcgctgcaagatctaatctcttttggattttaaaattttaatttccacttg 42911016  T
Q  304 cgttaagctcgtcgagcccaaca 326  Q
    |||||||||||||||||||||||    
T  42911015 cgttaagctcgtcgagcccaaca 42910993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 144 - 234
Target Start/End: Complemental strand, 38997320 - 38997230
Alignment:
Q  144 tattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggttttccacgttaaatattggtgttc 234  Q
    |||||||||||||| |||| ||||||| |||||||||||||| |||||||  ||  ||||||||||||||| |||| |||||||| |||||    
T  38997320 tattctttaatataatggattattttttggagtttgtcccgtagtttttcgttcgatattagagggttttcgacgtaaaatattgctgttc 38997230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 246 - 326
Target Start/End: Complemental strand, 38994779 - 38994699
Alignment:
Q  246 taccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca 326  Q
    ||||||||| |||||||||||||| |  ||||| |||||||||||||||||||||| || ||||| ||||| |||||||||    
T  38994779 taccgctgcactgcaagatccaattttgtttgggttttggaattttaatttacactagcattaagatcgtcaagcccaaca 38994699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 8539224 - 8539548
Alignment:
Q  1 gggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactata---t 97  Q
    |||||||||||| ||| ||||||||||||||||||||| |||||||| ||| ||||||||| | |||||| ||| |||||||||| ||||||||||   |    
T  8539224 gggaaaaatacatcggatgggtatcatctctataacttttaggtgctgtaaaataatagcaatcgaataggagtgggtctcacgg-aaacactataatat 8539322  T
Q  98 tgtatctctnnnnnnnnnnnnnnagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctc 197  Q
    |||||||||              |||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||    
T  8539323 tgtatctcttgtgtgtgta----agagagtggagataatattgtaatattcttaaatatagtggaatatctttcggagtttgtcccgtgatttttccctc 8539418  T
Q  198 agtattagagggttttccacgttaaatattggtgttca-nnnnnnnngctaccgctgcgctgcaagatccaatctcttttggattttggaattttaattt 296  Q
     |||||||||||||||||||||||||||||| ||||||         | ||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  8539419 ggtattagagggttttccacgttaaatattgatgttcattttttattgttaccgctgcgctgcaagatccaatctcttttagaatttggaattttaattt 8539518  T
Q  297 acacttgcgttaagctcgtcgagcccaaca 326  Q
    ||||||||||||||||||||||||||||||    
T  8539519 acacttgcgttaagctcgtcgagcccaaca 8539548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 144 - 326
Target Start/End: Complemental strand, 2100379 - 2100199
Alignment:
Q  144 tattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggttttccacgttaaatattggtgttcannnnnnnn 243  Q
    |||||||||||||||||||||||||||||||||||| |||   ||||||| |||| ||||| |||||||||||| |||||||||| ||||||            
T  2100379 tattctttaatatagtggaatatttttcggagtttgcccc---gtttttcgctcattattaaagggttttccaccttaaatattgatgttcaattttatc 2100283  T
Q  244 gctaccgctgcgctgcaaga-tccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca 326  Q
      || || || ||||||| | || |||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  2100282 attatcgttgtgctgcaaaattcaaatctcttatgaattttggaattttaatttacacttgtgttaagctcgtcgagcccaaca 2100199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 151
Target Start/End: Complemental strand, 2100753 - 2100723
Alignment:
Q  121 agagagtggagagaatattgtaatattcttt 151  Q
    |||||||||||||||||||||||||||||||    
T  2100753 agagagtggagagaatattgtaatattcttt 2100723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 5 - 105
Target Start/End: Original strand, 51302206 - 51302306
Alignment:
Q  5 aaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatct 104  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| | ||| ||||| |||||| ||| |||||||||||||||||||||||||||||    
T  51302206 aaaatacaccgggtgggaatcatctctataacttctaggtgctataaaacaattgcattcgaataggagtgggtctcacgggaaacactatattgtatct 51302305  T
Q  105 c 105  Q
    |    
T  51302306 c 51302306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 244 - 326
Target Start/End: Original strand, 51302937 - 51303019
Alignment:
Q  244 gctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca 326  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||| |||||||    
T  51302937 gctaccgctgcgctgcaagatccaatctgttttggattttgaaattttaatttacacttgcattaagctcgtcgatcccaaca 51303019  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 199 - 235
Target Start/End: Original strand, 51302308 - 51302344
Alignment:
Q  199 gtattagagggttttccacgttaaatattggtgttca 235  Q
    |||||||||||||||||||||||||||||||||||||    
T  51302308 gtattagagggttttccacgttaaatattggtgttca 51302344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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