View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0493_2D_low_1 (Length: 682)
Name: NF0493_2D_low_1
Description: NF0493_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493_2D_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-144; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 56 - 370
Target Start/End: Original strand, 7791495 - 7791806
Alignment:
| Q |
56 |
tagtgttgtatttattaaaaatattctaaaccaagttttattcaagttttcgtcataaaagctttattaaattattttgttcttgtctgttgaaggcccc |
155 |
Q |
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| T |
7791495 |
tagtgttgtatttgttaaaaatattttaaaccaagttttattcaagttttcgtcataaaagctttattaaattattttgttcttgtctgttgaaggcccc |
7791594 |
T |
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| Q |
156 |
agaagaaaaggctgagtggagtgnnnnnnncgtcatgatttatatatatttgaaaaataggattgtgatgtgttgttgcaatagtaaccatttgggtggt |
255 |
Q |
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| T |
7791595 |
agaagaaaaggctgagtggagtgaaaaaaacgtcatgatttatatttatttgaaaaaaaggattgtgatgggttg---caatagtaaccatttgggtggt |
7791691 |
T |
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| Q |
256 |
ggggtaggtaggtgatccaatggcgatgatttgataatcagtcggtgaaagaggagattgggagcatcttgagccgataagatgggggtagcaattgatg |
355 |
Q |
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| T |
7791692 |
ggggtaggtaggtgatccaatggcgatgatttgataatcagtcggtgaaagaggagattgggagcatcttgagccgataagatgggggtagcaattgatg |
7791791 |
T |
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| Q |
356 |
tcattgtcatgtttt |
370 |
Q |
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| T |
7791792 |
tcattgtcatgtttt |
7791806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 478 - 664
Target Start/End: Original strand, 7791923 - 7792113
Alignment:
| Q |
478 |
ttcggacacacaaaaacataatatttagtgtgagaaaaatttatataaatagagtgttgttataaatataaattagttat--gagtcatnnnnnnngata |
575 |
Q |
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| T |
7791923 |
ttcggacacacaaaaacataatatttagtgtgagaaaaatttatataaatagagtgttgttataaatataaattagttatatgagtcataaaaaaagata |
7792022 |
T |
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| Q |
576 |
gttatttgagttttcttcaccataaactctagtttttggatgtatggaatcttggatagtt---gtctatgtttgagttcatgggaaagatc |
664 |
Q |
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| T |
7792023 |
gttatttgagttt-catcaccataaactctagtttttggatgtatggaatcttggatagttgtcgtctatgtttgagtttatgggaaagatc |
7792113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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